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Report for CCDS35541.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35541.1 Public Mus musculus 1 Coa5 23 108 98 CCDS HistoryNCBI Gene:76178Re-query CCDS DB by CCDS ID:35541.1Re-query CCDS DB by GeneID:76178See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35541.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027286.6 ENSMUSP00000027286.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027286.6Link to Ensembl Protein Viewer:ENSMUSP00000027286.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027286Re-query CCDS DB by Protein ID:ENSMUSP00000027286
Original member Current member NCBI NM_198006.4 NP_932123.3 Accepted alive Link to Nucleotide Sequence:NM_198006.4Link to Protein Sequence:NP_932123.3Re-query CCDS DB by Nucleotide ID:NM_198006Re-query CCDS DB by Protein ID:NP_932123Link to BLAST:NP_932123.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932123.3 74 Q99M07 74 100% 0 0

Chromosomal Locations for CCDS 35541.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37420586 37420627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37428342 37428425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37429869 37429967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (225 nt):
ATGCCCCGGTATTATGAGGACAAGCCGGAGGGCGGCGCGTGTGCGGGCGTGAAGGAGGATCTGGGTGCAT
GTCTGCTGCAGTCTGCCTGTGTGCTCCAGGAAGGAAAATCCCCACGGCAGTGTTTGAAGGAAGGCAACTG
TAGAGCTTTGCAGTATTCCTTTTTTGAATGTAAAAGATCAATGCTGGATGCCAGATCAAGATTCAGAGGG
AGAAAAGGATATTGA

Translation (74 aa):
MPRYYEDKPEGGACAGVKEDLGACLLQSACVLQEGKSPRQCLKEGNCRALQYSFFECKRSMLDARSRFRG
RKGY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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