NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30476.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30476.1 Public Mus musculus X Gpr143 23 108 98 CCDS HistoryNCBI Gene:18241Re-query CCDS DB by CCDS ID:30476.1Re-query CCDS DB by GeneID:18241See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30476.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026383.3 ENSMUSP00000026383.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026383.3Link to Ensembl Protein Viewer:ENSMUSP00000026383.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000026383Re-query CCDS DB by Protein ID:ENSMUSP00000026383
Original member Current member NCBI NM_010951.3 NP_035081.3 Accepted alive Link to Nucleotide Sequence:NM_010951.3Link to Protein Sequence:NP_035081.3Re-query CCDS DB by Nucleotide ID:NM_010951Re-query CCDS DB by Protein ID:NP_035081Link to BLAST:NP_035081.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035081.3 405 P70259 405 100% 0 0

Chromosomal Locations for CCDS 30476.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 152782043 152782292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152785043 152785152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152786126 152786220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152790484 152790576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152793329 152793438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152795556 152795664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152797700 152797817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152798378 152798615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152808241 152808335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1218 nt):
ATGGCCTCCCCGCGCCTGGGAATTTTCTGCTGCCCTACGTGGGACGCAGCCACACAGCTGGTGCTAAGCT
TC
CAACCGCGGGTGTTCCATGCCCTGTGCCTGGGAAGCGGCACTCTCCGCCTGGTGCTTGGCCTCCTTCA
G
CTCCTATCAGGGCGTCGATCTGTTGGTCACAGGGCGCCTGCGACATCCCCAGCCGCCTCAGTCCACATC
CTC
CGTGCTGCCACTGCCTGTGACTTGCTTGGCTGCCTGGGAATCGTTATCAGGTCCACAGTGTGGATAG
CC
TACCCAGAGTTCATTGAAAACATTTCCAATGTGAATGCAACAGACATTTGGCCTGCTACTTTCTGTGT
G
GGGAGCGCAATGTGGATCCAGCTGTTGTACAGTGCCTGCTTCTGGTGGCTCTTTTGCTATGCAGTTGAT
GTA
TACTTGGTGATCAGGAGATCGGCGGGACGGAGCACCATCCTGCTGTACCACATCATGGCCTGGGGCC
TG
GCTGTGCTGCTCTGTGTGGAGGGAGCAGTCATGCTCTACTACCCTTCTGTGTCCAGGTGTGAGAGGGG
C
CTGGACCATGCCATCCCCCATTATGTCACCACATACTTGCCACTTCTGCTTGTCCTGGTGGCCAACCCA
ATC
CTGTTTCACAAGACAGTGACTTCAGTGGCCTCTTTACTGAAAGGAAGAAAAGGTGTTTACACAGAGA
AT
GAGAGACTGATGGGGGCTGTGATCAAGACCCGTTTTTTCAAAATAATGCTGGTGTTAATTGCATGTTG
G
TTGTCCAATATCATCAATGAAAGTCTTTTGTTCTACCTTGAAATGCAACCAGATATCCATGGAGGCTCT
CTG
AAACGCATCCAGAATGCAGCTAGGACCACATGGTTTATAATGGGAATACTGAATCCAGCCCAAGGAC
TT
CTCTTGTCTCTGGCCTTCTATGGCTGGACAGGATGCAGCCTGGATGTCCATCCTCCCAAGATGGTGAT
T
CAGTGGGAAACAATGACTGCCTCTGCTGCTGAGGGCACGTACCAGACCCCTGTGCGTTCCTGTGTGCCC
CAT
CAAAACCCCAGGAAGGTTGTATGTGTCGGGGGACATACTTCTGATGAGGTGCTGAGCATTTTGTCTG
AA
GATTCAGATGCCAGTACTGTTGAAATCCATACTGCAACTGGGTCCTGCAACATAAAGGAAGTTGACTC
C
ATTTCCCAAGCCCAGGGGGAACTCTGA


Translation (405 aa):
MASPRLGIFCCPTWDAATQLVLSFQPRVFHALCLGSGTLRLVLGLLQLLSGRRSVGHRAPATSPAASVHI
L
RAATACDLLGCL
GIVIRSTVWIAYPEFIENISNVNATDIWPATFCVGSAMWIQLLYSACFWWLFCYAVD
V
YLVIRRSAGR
STILLYHIMAWGLAVLLCVEGAVMLYYPSVSRCERGLDHAIPHYVTTYLPLLLVLVANP
I
LFHKTVTS
VASLLKGRKGVYTENERLMGAVIKTRFFKIMLVLIACWLSNIINESLLFYLEMQPDIHGGS
L
KRIQNAARTTWFIM
GILNPAQGLLLSLAFYGWTGCSLDVHPPKMVIQWETMTASAAEGTYQTPVRSCVP
H
QNPRKVVCVGGHTSDEVLSILSE
DSDASTVEIHTATGSCNIKEVDSISQAQGEL



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser