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Report for CCDS30276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30276.1 Public Mus musculus X Zfx 23 108 98 CCDS HistoryNCBI Gene:22764Re-query CCDS DB by CCDS ID:30276.1Re-query CCDS DB by GeneID:22764See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30276.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088102.11 ENSMUSP00000085423.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088102.11Link to Ensembl Protein Viewer:ENSMUSP00000085423.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088102Re-query CCDS DB by Protein ID:ENSMUSP00000085423
Original member Current member EBI ENSMUST00000113926.7 ENSMUSP00000109559.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113926.7Link to Ensembl Protein Viewer:ENSMUSP00000109559.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113926Re-query CCDS DB by Protein ID:ENSMUSP00000109559
Original member Current member EBI ENSMUST00000113927.7 ENSMUSP00000109560.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113927.7Link to Ensembl Protein Viewer:ENSMUSP00000109560.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113927Re-query CCDS DB by Protein ID:ENSMUSP00000109560
Original member Current member NCBI NM_001044386.1 NP_001037851.1 Accepted alive Link to Nucleotide Sequence:NM_001044386.1Link to Protein Sequence:NP_001037851.1Re-query CCDS DB by Nucleotide ID:NM_001044386Re-query CCDS DB by Protein ID:NP_001037851Link to BLAST:NP_001037851.1
Original member NCBI NM_001358356.1 NP_001345285.1 Updated not alive Link to Nucleotide Sequence:NM_001358356.1Link to Protein Sequence:NP_001345285.1Re-query CCDS DB by Nucleotide ID:NM_001358356Re-query CCDS DB by Protein ID:NP_001345285
Current member NCBI NM_001358356.2 NP_001345285.1 Accepted alive Link to Nucleotide Sequence:NM_001358356.2Link to Protein Sequence:NP_001345285.1Re-query CCDS DB by Nucleotide ID:NM_001358356Re-query CCDS DB by Protein ID:NP_001345285Link to BLAST:NP_001345285.1
Original member Current member NCBI NM_011768.2 NP_035898.2 Accepted alive Link to Nucleotide Sequence:NM_011768.2Link to Protein Sequence:NP_035898.2Re-query CCDS DB by Nucleotide ID:NM_011768Re-query CCDS DB by Protein ID:NP_035898Link to BLAST:NP_035898.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001037851.1 799 P17012 799 100% 0 0
NP_001345285.1 799 P17012 799 100% 0 0
NP_035898.2 799 P17012 799 100% 0 0

Chromosomal Locations for CCDS 30276.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 94078796 94079979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94080720 94080860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94081337 94081486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94081825 94081968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94082150 94082299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94098283 94098852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 94102291 94102351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2400 nt):
ATGGATGAAGATGGACTTGAATTACAACAACAAGCACCAAACTCATTTTTTGATGCAACAGGAGCTGGTG
CT
ACACACATGGATGGTAATCAAATTGTTGTGGAAGTTCAAGAAACGGTTTATGTGTCAGATGTTGTGGA
T
TCCGACATAACCGTACATAACTATGTTCCCGATGACCCAGATTCAGTTGTCATCCAGGATGTCATTGAG
GAT
GTTGTTATAGAAGATGTCCAGTGTACAGACATCATGGACGAAGCAGATGTATCGGAAACAGTCATCA
TC
CCTGAACAAGTGCTGGATTCAGATGTAACCGAAGAAGTTTCTTTAACACATTGCACAGTTCCAGATGA
T
GTTTTAGCTTCTGATATCACTTCAGCCTCAATATCTATGCCGGAACATGTCTTGACAAGTGAATCTATA
CAT
GTGTCTGACGTTGGTCACGTTGAACATGTGGTTCATGATAGTGTAGTAGAAGCAGAAATCGTCACAG
AT
CCTCTGGCCGCTGATGTTGTCTCAGAAGAAGTGTTGGTAGCAGACTGTGCCTCTGAAGCAGTCATAGA
T
GCCAACGGGATCCCTGTGAACCAGCAGGATGAAGAGAAAAACAACTGTGAGGACTACCTTATGATCTCT
T
TG
GATGATGCTGGTAAAATAGAACATGATGGTTCATCTGGACTGACTATGGACAACGAAACAGAAATTG
AC
CCTTGTAAAGTGGATGGCACTTGCCCTGAAGTCATCAAGGTGTACATTTTTAAAGCTGATCCTGGAGA
A
GATGACTTAGGTGGAACTGTAGATATCGTCGAAAGTGAGCCTGAGAATGAGCATGGAGTTGAACTACTC
GAT
CCAAACAATAGTATTCGCGTTCCCAGGGAAAAGATGGTTTATATGGCTGTTAACGACTCTCAGCAAG
AA
GAAGAAGAACTGAATGTCGCTGAGATTGCTGATGAAGTTTATATGGAAGTGATTGTTGGAGAGGAGGA
T
GCTGCAGCTGCAGCCGCAGCCGCAGTGCATGAACAGCAAGTGGAGGACAACGAAATGAAAACCTTCATG
CCG
ATTGCATGGGCAGCTGCTTACGGTAATAATTCTGATGGAATTGAAAACCGGAATGGCACTGCAAGTG
CC
CTCTTGCACATAGATGAGTCTGCTGGCCTCGGCAGACTGGCTAAACAAAAACCAAAGAAAAGGAGAAG
A
CCTGATTCCAGGCAGTACCAAACAGCAATAATTATTGGCCCAGATGGACATCCTCTGACTGTCTACCCT
TGC
ATGATTTGTGGCAAGAAGTTTAAATCGAGAGGTTTCTTGAAAAGACACATGAAAAACCATCCTGAAC
AC
CTTGCCAAGAAAAAGTACCGCTGTACTGACTGTGATTACACTACCAACAAGAAGATAAGTTTACACAA
T
CACCTGGAGAGCCACAAGCTAACCAGCAAGGCAGAGAAAGCCATAGAATGCGATGAGTGCGGAAAGCAT
TTC
TCTCATGCTGGCGCTTTGTTTACCCATAAAATGGTGCATAAGGAAAAAGGAGCCAACAAAATGCACA
AG
TGTAAGTTCTGTGAATATGAAACAGCTGAACAAGGCCTATTGAATCGCCATCTTTTGGCAGTCCACAG
C
AAGAATTTTCCTCACATTTGTGTAGAGTGTGGCAAAGGTTTCCGCCATCCGTCAGAGCTCAAAAAGCAC
ATG
CGAATCCATACTGGAGAAAAGCCCTATGAATGCCAGTACTGCGAATACAGGTCTGCAGATTCTTCTA
AC
TTGAAAACCCATGTAAAAACTAAGCATAGTAAAGAGATGCCATTCAAGTGTGACATTTGTCTTCTGAC
T
TTCTCAGATACCAAAGAGGTGCAACAACATGCTCTTGTCCACCAAGAGAGCAAAACTCACCAGTGTTTG
CAT
TGTGATCACAAGAGTTCAAACTCAAGTGATTTGAAACGACACATAATTTCAGTTCATACGAAGGACT
AT
CCTCATAAGTGTGACATGTGCGATAAAGGCTTTCATAGGCCTTCAGAACTCAAGAAACATGTGGCTGC
C
CACAAGGGTAAAAAAATGCACCAGTGTAGACATTGTGACTTTAAGATTGCAGATCCGTTTGTACTAAGT
CGC
CATATTCTCTCGGTTCATACAAAGGACCTTCCATTTAGGTGTAAGAGATGTAGAAAAGGATTTCGGC
AA
CAAAGTGAGCTTAAAAAGCATATGAAGACCCACAGTGGCCGGAAAGTGTATCAGTGTGAGTACTGTGA
A
TATAGCACTACAGATGCCTCAGGCTTTAAGCGGCACGTTATCTCCATTCATACGAAAGACTATCCTCAC
CGC
TGTGAGTACTGCAAGAAAGGATTCCGAAGACCCTCGGAAAAGAACCAGCACATAATGCGACATCATA
AA
GAAGTTGGCCTGCCCTAA


Translation (799 aa):
MDEDGLELQQQAPNSFFDATGAGATHMDGNQIVVEVQETVYVSDVVDSDITVHNYVPDDPDSVVIQDVIE
D
VVIEDVQCTDIMDEADVSETVIIPEQVLDSDVTEEVSLTHCTVPDDVLASDITSASISMPEHVLTSESI
H
VSDVGHVEHVVHDSVVEAEIVTDPLAADVVSEEVLVADCASEAVIDANGIPVNQQDEEKNNCEDYLMIS

L
DDAGKIEHDGSSGLTMDNETEIDPCKVDGTCPEVIKVYIFKADPGEDDLGGTVDIVESEPENEHGVELL
D
PNNSIRVPREKMVYMAVNDSQQEEEEL
NVAEIADEVYMEVIVGEEDAAAAAAAAVHEQQVEDNEMKTFM
P
IAWAAAY
GNNSDGIENRNGTASALLHIDESAGLGRLAKQKPKKRRRPDSRQYQTAIIIGPDGHPLTVYP
C
MICGKKFKSRGFLKRHMKNHPEHLAKKKYRCTDCDYTTNKKISLHNHLESHKLTSKAEKAIECDECGKH
F
SHAGALFTHKMVHKEKGANKMHKCKFCEYETAEQGLLNRHLLAVHSKNFPHICVECGKGFRHPSELKKH
M
RIHTGEKPYECQYCEYRSADSSNLKTHVKTKHSKEMPFKCDICLLTFSDTKEVQQHALVHQESKTHQCL
H
CDHKSSNSSDLKRHIISVHTKDYPHKCDMCDKGFHRPSELKKHVAAHKGKKMHQCRHCDFKIADPFVLS
R
HILSVHTKDLPFRCKRCRKGFRQQSELKKHMKTHSGRKVYQCEYCEYSTTDASGFKRHVISIHTKDYPH
R
CEYCKKGFRRPSEKNQHIMRHHKEVGLP




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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