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Report for CCDS30230.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30230.1 Public Mus musculus X Ubl4a 23 108 98 CCDS HistoryNCBI Gene:27643Re-query CCDS DB by CCDS ID:30230.1Re-query CCDS DB by GeneID:27643See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30230.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000155676.7 ENSMUSP00000120461.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000155676.7Link to Ensembl Protein Viewer:ENSMUSP00000120461.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000155676Re-query CCDS DB by Protein ID:ENSMUSP00000120461
Original member Current member EBI ENSMUST00000178691.1 ENSMUSP00000136070.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178691.1Link to Ensembl Protein Viewer:ENSMUSP00000136070.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178691Re-query CCDS DB by Protein ID:ENSMUSP00000136070
Original member NCBI NM_001278271.1 NP_001265200.1 Removed alive Link to Nucleotide Sequence:NM_001278271.1Link to Protein Sequence:NP_001265200.1Re-query CCDS DB by Nucleotide ID:NM_001278271Re-query CCDS DB by Protein ID:NP_001265200Link to BLAST:NP_001265200.1
Original member NCBI NM_001278272.1 NP_001265201.1 Removed alive Link to Nucleotide Sequence:NM_001278272.1Link to Protein Sequence:NP_001265201.1Re-query CCDS DB by Nucleotide ID:NM_001278272Re-query CCDS DB by Protein ID:NP_001265201Link to BLAST:NP_001265201.1
Original member Current member NCBI NM_145405.2 NP_663380.1 Accepted alive Link to Nucleotide Sequence:NM_145405.2Link to Protein Sequence:NP_663380.1Re-query CCDS DB by Nucleotide ID:NM_145405Re-query CCDS DB by Protein ID:NP_663380Link to BLAST:NP_663380.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663380.1 157 P21126 157 100% 0 0

Chromosomal Locations for CCDS 30230.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 74367476 74367586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74367701 74367909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74368153 74368258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74368416 74368463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (474 nt):
ATGCAGCTGACCGTGAAGGCGCTCCAGGGCCGGGAATGTAGCCTACAGGTGGCGGAGGACGAGCTAGTGT
CTACACTGAAGCACCTGGTCTCGGATAAGCTGAATGTCCCTGTGCGCCAGCAACGTCTGCTGTTCAAGGG
CAAGGCCCTAGCAGATGAAAAACGACTGTCAGATTACAACATTGGGCCCAATTCTAAGCTCAACCTAGTT
GTTAAGCCTTTGGAGAAGGTGCTACTGGAAGAAGGGTCTGCCCACAGACTGGTCGACTCCCCAGCCACCC
CCATCTGGCAGCTGATCTCCAAAGTCCTGGCCCGTCACTTCAGTGTAGCAGATGCCAGCAGGGTCCTGGA
ACAACTACAGAGGGATTATGACAGGTCCTTGAGCCGCCTAACACTGGATGACATCGAACGTTTGGCCAGC
CGCTTTCTACACCCTGAAGTGACTGAGGCTATGGAAAAAGGGTTCTGCAAATAG

Translation (157 aa):
MQLTVKALQGRECSLQVAEDELVSTLKHLVSDKLNVPVRQQRLLFKGKALADEKRLSDYNIGPNSKLNLV
VKPLEKVLLEEGSAHRLVDSPATPIWQLISKVLARHFSVADASRVLEQLQRDYDRSLSRLTLDDIERLAS
RFLHPEVTEAMEKGFCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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