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Report for CCDS29854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29854.1 Public Mus musculus 19 Twnk 23 108 98 CCDS HistoryNCBI Gene:226153Re-query CCDS DB by CCDS ID:29854.1Re-query CCDS DB by GeneID:226153See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29854.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026227.2 ENSMUSP00000026227.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026227.2Link to Ensembl Protein Viewer:ENSMUSP00000026227.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000026227Re-query CCDS DB by Protein ID:ENSMUSP00000026227
Original member Current member NCBI NM_153796.4 NP_722491.2 Accepted alive Link to Nucleotide Sequence:NM_153796.4Link to Protein Sequence:NP_722491.2Re-query CCDS DB by Nucleotide ID:NM_153796Re-query CCDS DB by Protein ID:NP_722491Link to BLAST:NP_722491.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_722491.2 685 Q8CIW5-1 685 100% 0 0

Chromosomal Locations for CCDS 29854.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45007130 45008375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45009280 45009520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45010132 45010239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45010418 45010559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45011584 45011904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2058 nt):
ATGTGGCTTCTTCTCCGACGTGCATATCCCCTCCGGATCTTGCTGCCACTGCGTGGCGAGTGGGTGGGTA
GGAGGGGCCTGCCCAGAAGCTTGGCGCCAGGCCCTCCCCGCAGAAGGTACAGAAAAGAAGCGCTCCCAGC
CTTAGAGATGCCAGTGTCGCCGGTGACTACGACTGAAATCCGCCAGTATTTACGTGCACATGGGATCCCC
TTCCAGGATGGCCACAGCTGCCTTCGAGCACCAAGTCCCTTTGTGGTGTCCTCAGACATCAAAAATGAGA
AAAAGGACGCTCCCACTTCCTTCTGCCTCTTCATTGACAAGACCACAGGACACTTTCTTTGCATGACCAG
CCTAGCAGAAGGGAGCTGGGAAGACTTGCAGGCCAGTGTGGAGGGACGAGGGGATGGGGCCAAAGAGGGT
GTCCTACTTAGGGAAGGCCCAGAAGCTGAGGTTAGGGAGGAGGTCTTGAGGATCTGGAACCGAGCCATAC
CTCTTTGGGAGCTTCCAGACCCTGAGGAAGCCCAGCTAGCTCGTGTGATGTTTGGCCTTACCAAGGTGAC
AGATGACACACTCAGGCGATTCAGTGTCCGCTATCTTCGATCTGCTCGAAGTCTGGTCTTCCCTTGGTTC
ACCCCTGGGAGCTCAGGATTACGTGGCCTGAAGCTACTAGGGGCTGAGGGTCAGGAAAATGGAGTACAGT
ATGTAGAGACCACCATCCCCCGGCCTGGTGTCTATCACAACCTATTTGGATTACCACTGATCAGCCGGAG
AGATACTGAGGTGGTTGTGACAAGTCGTGAACTGGACAGCCTGGCCTTGAGCCAGTCGACGGGGCTGCCA
ACCCTTTCCCTACCCCGAGGGACAGTCTGCTTACCCCCAGCCTTACTGCCTTACCTTGAACAGTTCCGTC
GGATTGTGTTCTGGTTAGGAGATGACCTTCGATCCTGGGAAGCTGCCAAACTGTTTGCTCGAAAACTCAA
CCCCAAGCGATGCTCTCTGGTGAGGCCTGGGAACCAACAGCCTCGTCCCCTGGAGGCCTTAAACCAAGGC
TTAAGTCTTCCCCGTATTCTTCGTACCGCCCTACCTGCCTGGCACAAGTCTATTGTGTCTTTTCGGCAGC
TCCGAGAGGAGGTTTTAGGAGAACTGTCAAATGTAGAGCAAGCGGCTGGTGTCCGTTGGAGCCGCTTCCC
AGACCTGAATCGTCTGCTGAAGGGACATCGGAAGGGCGAGTTGACGGTCTTTACAGGGCCAACAGGCAGT
GGCAAGACAACATTCATCAGTGAGTATGCCCTGGACTTGTGTACCCAGGGAGTGAACACACTGTGGGGTA
GCTTTGAGATCAGCAACGTGAGACTAGCCCGGGTCATGCTGACCCAGTTTGCTGTGACACGGCTGGAAGA
GCAACTGGACAAGTATGAAGAGTGGGCAGACCGTTTTGAGGACCTGCCTCTCTACTTCATGACTTTCCAC
GGACAACAGAGCATCAGGTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATG
TAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAGGATTGCAGCTCAAGA
CTACATTGTTGGAGCCTTTCGGAAGTTTGCTACAGACAACAGTTGCCACGTGACTCTGGTCATTCACCCT
CGGAAAGAAGACGACGACAAGGAACTGCAGACAGCATCCATTTTCGGCTCAGCCAAAGCAAGCCAAGAAG
CAGACAATGTTCTGATCTTACAGGATAGGAAACTGGTGACTGGGCCTGGGAAACGGTATCTGCAGGTGTC
CAAGAATCGCTTTGATGGAGACGTAGGTGTCTTCCCACTGGAGTTCAACAAGAATTCCCTTACCTTCTCC
ATCCCACCCAAGAGCAAAGCCCGACTCAAGAAGATCAAGGACGACAATGGACTAGTGGCCAAAAAATCCT
CTTCTGGCAAAAAAGGGGCTGCGCACCAGAACCCTGAGATTTGCTTAGGCCAGGACCCCAGCCCCGCCCA
GCCAGATACCTCCAAGTCCTCAGGGTGA

Translation (685 aa):
MWLLLRRAYPLRILLPLRGEWVGRRGLPRSLAPGPPRRRYRKEALPALEMPVSPVTTTEIRQYLRAHGIP
FQDGHSCLRAPSPFVVSSDIKNEKKDAPTSFCLFIDKTTGHFLCMTSLAEGSWEDLQASVEGRGDGAKEG
VLLREGPEAEVREEVLRIWNRAIPLWELPDPEEAQLARVMFGLTKVTDDTLRRFSVRYLRSARSLVFPWF
TPGSSGLRGLKLLGAEGQENGVQYVETTIPRPGVYHNLFGLPLISRRDTEVVVTSRELDSLALSQSTGLP
TLSLPRGTVCLPPALLPYLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCSLVRPGNQQPRPLEALNQG
LSLPRILRTALPAWHKSIVSFRQLREEVLGELSNVEQAAGVRWSRFPDLNRLLKGHRKGELTVFTGPTGS
GKTTFISEYALDLCTQGVNTLWGSFEISNVRLARVMLTQFAVTRLEEQLDKYEEWADRFEDLPLYFMTFH
GQQSIRSVIDTMQHAVYVYDVCHVVIDNLQFMMGHEQLSSDRIAAQDYIVGAFRKFATDNSCHVTLVIHP
RKEDDDKELQTASIFGSAKASQEADNVLILQDRKLVTGPGKRYLQVSKNRFDGDVGVFPLEFNKNSLTFS
IPPKSKARLKKIKDDNGLVAKKSSSGKKGAAHQNPEICLGQDPSPAQPDTSKSSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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