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Report for CCDS29441.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29441.1 Public Mus musculus 19 Actn3 23 108 98 CCDS HistoryNCBI Gene:11474Re-query CCDS DB by CCDS ID:29441.1Re-query CCDS DB by GeneID:11474See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29441.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006626.4 ENSMUSP00000006626.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006626.4Link to Ensembl Protein Viewer:ENSMUSP00000006626.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000006626Re-query CCDS DB by Protein ID:ENSMUSP00000006626
Original member Current member NCBI NM_013456.2 NP_038484.1 Accepted alive Link to Nucleotide Sequence:NM_013456.2Link to Protein Sequence:NP_038484.1Re-query CCDS DB by Nucleotide ID:NM_013456Re-query CCDS DB by Protein ID:NP_038484Link to BLAST:NP_038484.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038484.1 900 O88990 900 100% 0 0

Chromosomal Locations for CCDS 29441.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4861345 4861503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4861585 4861743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4862170 4862235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4862324 4862470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4863135 4863314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4863410 4863544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4863971 4864153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4864425 4864565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4864653 4864761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4865299 4865449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4867541 4867688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4867813 4868043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4868718 4868810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4869358 4869443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4870912 4870993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4871082 4871160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4871597 4871684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4871771 4871857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4872239 4872358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4872542 4872656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4877711 4877854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2703 nt):
ATGATGATGGTTATGCAGCCCGAGGGTCTGGGGGCCGGGGAGGGGCCCTTCTCTGGCGGTGGGGGCGGCG
AGTACATGGAACAGGAGGAGGACTGGGACCGCGACTTGCTGTTGGACCCGGCCTGGGAGAAACAGCAGCG
GAAAACCTTCACTGCCTGGTGCAACTCACATCTGCGCAAGGCAGGCACGCAGATCGAGAACATTGAAGAG
GACTTCCGCAATGGCCTGAAGCTCATGCTGCTCCTGGAGGTCATTTCCGGAGAGAGGCTGCCTAGGCCCG
ACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGG
AGTTAAGCTAGTGTCCATCGGTGCTGAAGAAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATC
TGGACCATCATCCTCCGCTTTGCCATTCAGGACATCTCTGTAGAAGAGACCTCAGCCAAAGAAGGCTTGC
TTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAGCTGGAA
GGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATGCCAAGCTTCGC
AAGGATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGA
TGCTGGATGCAGAAGATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTG
CTTCTACCATGCGTTTGCTGGGGCTGAGCAGGCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCT
GTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAGCTGTTGGAGTGGATCC
GCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGA
GGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAAC
TTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGG
TTTCGGACATAGCCAATGCGTGGCGGGGACTGGAGCAGGTAGAGAAGGGCTATGAGGATTGGCTGCTTTC
GGAGATCAGGCGTCTGCAGAGGCTTCAGCACCTGGCTGAGAAGTTCCAACAGAAGGCTTCCCTGCATGAA
GCTTGGACCCGGGGCAAAGAGGAAATGTTAAACCAGCACGACTACGAGTCAGCCTCGCTGCAGGAGGTGC
GTGCGCTCTTGCGACGTCATGAGGCCTTTGAGAGCGACCTGGCTGCGCACCAAGACCGGGTGGAACACAT
CGCGGCCCTGGCCCAGGAACTCAATGAGCTCGACTACCATGAGGCAGCCTCCGTGAACAGCCGCTGCCAA
GCCATCTGTGACCAGTGGGATAACTTGGGTACACTGACCCAGAAGAGGAGGGACGCACTAGAGAGGATGG
AGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTG
GCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGAGCCTG
CTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCA
TCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCAC
CCTCAGTTCGCAGGACATCAACAATAAGTGGGATACAGTCAGAAAGCTGGTACCCAGCCGTGACCAGACA
CTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATG
CCATAGGACCCTGGATCCAGGGAAAAGTGGAGGAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCT
GGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGG
CTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGG
AGCACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCA
GGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCAC
TTTGACCGGAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACG
ATCTGGGAGAAGTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTT
CCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCC
TTCAAAATCCTGGCAGGAGACAAGAACTACATTACCCCAGAGGAGCTGCGGAGAGAGCTCCCAGCCGAGC
AGGCTGAGTACTGCATCCGTCGGATGGCGCCCTACAAGGGATCTGGGGCTCCATCTGGAGCTCTGGACTA
CGTGGCTTTCTCTAGTGCCCTCTATGGAGAGAGTGACCTCTGA

Translation (900 aa):
MMMVMQPEGLGAGEGPFSGGGGGEYMEQEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEE
DFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMI
WTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLR
KDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFAGAEQAETAANRICKVLA
VNQENEKLMEEYEKLASELLEWIRRTVPWLENRVGEPSMSAMQRKLEDFRDYRRLHKPPRVQEKCQLEIN
FNTLQTKLRLSHRPAFMPSEGKLVSDIANAWRGLEQVEKGYEDWLLSEIRRLQRLQHLAEKFQQKASLHE
AWTRGKEEMLNQHDYESASLQEVRALLRRHEAFESDLAAHQDRVEHIAALAQELNELDYHEAASVNSRCQ
AICDQWDNLGTLTQKRRDALERMEKLLETIDQLQLEFARRAAPFNNWLDGAIEDLQDVWLVHSVEETQSL
LTAHEQFKATLPEADRERGAILGIQGEIQKICQTYGLRPKSGNPYITLSSQDINNKWDTVRKLVPSRDQT
LQEELARQQVNERLRRQFAAQANAIGPWIQGKVEEVGRLAAGLAGSLEEQMAGLRQQEQNIINYKSNIDR
LEGDHQLLQESLVFDNKHTVYSMEHIRVGWEQLLTSIARTINEVENQVLTRDAKGLSQEQLNEFRASFNH
FDRKRNGMMEPDDFRACLISMGYDLGEVEFARIMTMVDPNAAGVVTFQAFIDFMTRETAETDTAEQVVAS
FKILAGDKNYITPEELRRELPAEQAEYCIRRMAPYKGSGAPSGALDYVAFSSALYGESDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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