NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29308.1 Public Mus musculus 18 Oacyl 23 108 98 CCDS HistoryNCBI Gene:319888Re-query CCDS DB by CCDS ID:29308.1Re-query CCDS DB by GeneID:319888See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29308.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115097.7 ENSMUSP00000110749.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115097.7Link to Ensembl Protein Viewer:ENSMUSP00000110749.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115097Re-query CCDS DB by Protein ID:ENSMUSP00000110749
Original member Current member NCBI NM_177028.3 NP_796002.1 Accepted alive Link to Nucleotide Sequence:NM_177028.3Link to Protein Sequence:NP_796002.1Re-query CCDS DB by Nucleotide ID:NM_177028Re-query CCDS DB by Protein ID:NP_796002Link to BLAST:NP_796002.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796002.1 685 Q8BML2-1 685 100% 0 0

Chromosomal Locations for CCDS 29308.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 65698294 65698441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65707308 65707447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65710522 65710600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65720192 65720330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65722490 65722707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65725330 65725509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65726278 65726380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65731395 65731496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65737839 65738004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65740076 65740155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65742202 65742315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65745238 65745370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65747719 65747905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65749625 65749767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65750065 65750190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2058 nt):
ATGATGGCCCTCACTTCGCTAGCTTGCCTGCACGCTCTGTTCCCCTTTGTTTCTCCTGCAAGAAACATTT
CTCTCAAGTGCATGCAAGATACTGACGAATTCCTTTCTGATCTGAACTCACTGAAGCCCAAAGAATACGC
TCTGAGAATGTATGACTCGGTGGGGAAGCTTGGAAGCAACGTTCTTACCGGCAACGTGGACAGGCTGGGA
TCCTACAGCGAGTGCCTTTCCACCCGGAGCCCCAAGGGGAGTTTCCGGGGGCAGTACTGCAAGCTTCATA
TCCTTCAGGATGGAACAGACTATAGTGTGGGCGTGTGTGTCCCTGATTCTTGTGCTGAAGAGGACGTGAC
CATGATGTCTCAGCTGGGTACTCTCAAGTTCAGAAACACGTCATTCTTGGAACCTTCCCTCTCCCTCTTT
ACAAAAGACTCTTCCTCATCTTGTGAAGTTGTGGCCAGATGTGCAGCTGGGGCCATGAGTCCAGATATGT
TTGCTTCCGTGTGCCTGTTCATCACCTTGCTAGGCCTCGTCCTTCCTGTGGCTGGAACTGTTTACATGGT
GGCCAGGGACTGGGGCTTGGACCTCAGGACATCGTCTGTACATGGGACTCCTCCTACCAGTTGTGAGAGT
CTGCCTTTGCGAAACATGGAGAGCAACAGGCAAAGAAGCAGGGCCAGTTGCCAAGTTCAGCTCCCTCCTC
CAGGAGCCCCAAGCAGAGGAAGAAGGTTTCTAGGAGCCGTGGATGAAGTTCTGCAGTGCTTTTCTTGGCA
GAAGAACATGCCAGCCATCTGCAGCCCAGAACTTCCAGGAGGCACCTGCCGGACACTAAATGGGATCCGA
GTCCTGAGTCTCCTCTGGGTTATCTCTGGACACACCAGTCAGATGACAGCTTGGCTATCTTTGGATAATG
TGCTCGAATGGAAATCCAGAGTGCCCGAGAACCCACTGTACCTCTACTCTCGGAGTGGCCCATTCTATCT
CGGGGTGGATACATTTTTCCTCATCAGTGGTTGGCTAAGTGCAAGGTCATTTCTAAAGATGCACCAGAAC
ACCAGCACAGGAATAACTCCTAAAGTCATCCTCAGATACTTTCTGAAACGTTTTACAAGGTTGCAGCTCC
TTCATATGTACTCTGTGTGCTTGCTGGTTGGTTTCTTCTCTTTTGTTCCCTGGGGACCTGTCTGGGAAGT
GGCCCAGTTCCACTGGGATAACTGCCGGGAGGTTTGGTGGACGAATCTGCTGTTGCTGAATAACTTCCTG
TCTGTCCAGAATGCCTGCAATGGCTGGACTTGGTACCTCGCCAGCGACTTCCAGTTCCACCTGACGACAC
CGCTGATCTTCTTCGTCCATGGAAAAAGTAAACGTGTCTTCGTCCTTCTCGGGGGCCTGCTGTTCCTGGC
CTCTTCCACAGCCACCACTCTGCTCACCTTGGCTTATAAACTTCCAGTGGCATCTCCAGCAGCAGCCAGT
GAACATGGGACTGTGCTCTATTTCTCAGAGTATTACACCAAGCCCTACTGCCGCTGTGGCCCCTTCCTTG
TGGGCCTCTTCCTGAGCATGTTCATGCATTCAGACCACCCTACAGACATTCTCAAAACGACGGTGCAGGC
CATGCTGGGCTGGACTTGGTCTCTGCTGACCCTGTTTGCAGTTGTTGCCCTGGCTTATGTACTGGACGAT
ACCTCTCCAACCTCTTCCGTAGCTGCTGCCATCTACCAGGCCCTCCATCGTACCCTGTGGGCAGCAGCTG
TGGGCTGGGTCATCTTTGCCTGTCAGGAAGGCTATGGAGGTCCCGTGAAACGCATGCTTTCTTGGGGCAT
CTGGAGTCTCCCGGCCAGCATAAGCTACGCTTGCTACCTCGTACACCCCATTGTCATCATTCTCTATAAC
GGACTGCAGGAGACCCTTATTCACTACACGGACACCAACATGCTCTATCTTTTCTTCGGACACTGTGTGC
TGACCTTCCTCGGTGGGCTGGTCCTGACCCTGTTCATCGAGCGACCCTGGCAGGAACTGAAGTGGGGCCT
GTGGGGACCAGAGCCTGCTAGGCCGTGA

Translation (685 aa):
MMALTSLACLHALFPFVSPARNISLKCMQDTDEFLSDLNSLKPKEYALRMYDSVGKLGSNVLTGNVDRLG
SYSECLSTRSPKGSFRGQYCKLHILQDGTDYSVGVCVPDSCAEEDVTMMSQLGTLKFRNTSFLEPSLSLF
TKDSSSSCEVVARCAAGAMSPDMFASVCLFITLLGLVLPVAGTVYMVARDWGLDLRTSSVHGTPPTSCES
LPLRNMESNRQRSRASCQVQLPPPGAPSRGRRFLGAVDEVLQCFSWQKNMPAICSPELPGGTCRTLNGIR
VLSLLWVISGHTSQMTAWLSLDNVLEWKSRVPENPLYLYSRSGPFYLGVDTFFLISGWLSARSFLKMHQN
TSTGITPKVILRYFLKRFTRLQLLHMYSVCLLVGFFSFVPWGPVWEVAQFHWDNCREVWWTNLLLLNNFL
SVQNACNGWTWYLASDFQFHLTTPLIFFVHGKSKRVFVLLGGLLFLASSTATTLLTLAYKLPVASPAAAS
EHGTVLYFSEYYTKPYCRCGPFLVGLFLSMFMHSDHPTDILKTTVQAMLGWTWSLLTLFAVVALAYVLDD
TSPTSSVAAAIYQALHRTLWAAAVGWVIFACQEGYGGPVKRMLSWGIWSLPASISYACYLVHPIVIILYN
GLQETLIHYTDTNMLYLFFGHCVLTFLGGLVLTLFIERPWQELKWGLWGPEPARP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH