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Report for CCDS28935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28935.1 Public Mus musculus 17 Efna5 23 108 98 CCDS HistoryNCBI Gene:13640Re-query CCDS DB by CCDS ID:28935.1Re-query CCDS DB by GeneID:13640See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28935.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076840.11 ENSMUSP00000076115.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076840.11Link to Ensembl Protein Viewer:ENSMUSP00000076115.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000076840Re-query CCDS DB by Protein ID:ENSMUSP00000076115
Original member NCBI NM_207654.2 NP_997537.1 Updated not alive Link to Nucleotide Sequence:NM_207654.2Link to Protein Sequence:NP_997537.1Re-query CCDS DB by Nucleotide ID:NM_207654Re-query CCDS DB by Protein ID:NP_997537
Current member NCBI NM_207654.3 NP_997537.1 Accepted alive Link to Nucleotide Sequence:NM_207654.3Link to Protein Sequence:NP_997537.1Re-query CCDS DB by Nucleotide ID:NM_207654Re-query CCDS DB by Protein ID:NP_997537Link to BLAST:NP_997537.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997537.1 228 O08543-1 228 100% 0 0

Chromosomal Locations for CCDS 28935.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 62607342 62607463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 62613316 62613396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 62613837 62613902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 62650842 62651134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 62881006 62881130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGTTGCACGTGGAGATGTTGACGCTGCTCTTTCTGGTGCTCTGGATGTGTGTGTTCAGCCAGGACCCGG
GC
TCCAAAGTCGTCGCCGACCGCTACGCCGTCTACTGGAACAGCAGCAACCCCAGATTCCAGAGGGGTGA
C
TACCACATTGATGTCTGTATCAATGACTACCTGGATGTTTTCTGCCCTCACTATGAGGACTCTGTCCCA
GAA
GACAAGACTGAGCGCTACGTCCTGTACATGGTGAATTTTGATGGGTACAGTGCCTGCGACCACACGT
CC
AAAGGGTTCAAGAGATGGGAATGTAACCGGCCTCACTCCCCAAACGGACCGCTGAAGTTCTCGGAAAA
A
TTCCAGCTCTTCACTCCCTTTTCTTTAGGATTTGAATTCAGGCCAGGCCGAGAGTATTTCTACATCTCC
TCT
GCAATCCCAGACAACGGAAGAAGGTCCTGTCTAAAGCTCAAAGTCTTTGTGAGACCAACAAATAGCT
GT
ATGAAAACTATAGGTGTTCATGATCGTGTTTTCGATGTTAACGACAAAGTAGAAAATTCATTAGAACC
A
GCAGATGACACCGTACATGAGTCAGCCGAGCCATCCCGCGGTGAGAACGCGGCGCAGACACCAAGGATA
CCC
AGCCGCCTTTTGGCAATCCTACTGTTCCTCCTGGCGATGCTTTTGACATTATAG


Translation (228 aa):
MLHVEMLTLLFLVLWMCVFSQDPGSKVVADRYAVYWNSSNPRFQRGDYHIDVCINDYLDVFCPHYEDSVP
E
DKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFEFRPGREYFYI
S
S
AIPDNGRRSCLKLKVFVRPT
NSCMKTIGVHDRVFDVNDKVENSLEPADDTVHESAEPSRGENAAQTPRI
P
SRLLAILLFLLAMLLTL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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