CCDS Report for Consensus CDS

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Report for CCDS28795.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
28795.1	Public	Mus musculus	17	Adgrf1	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28795.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000047399.5	ENSMUSP00000049380.5	Accepted	alive
		NCBI	NM_133776.2	NP_598537.2	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_598537.2	908	Q8VEC3	908	100%	0	0

Chromosomal Locations for CCDS 28795.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)

Genome Browser links:

Chromosome	Start	Stop
17	43291048	43291116
17	43293224	43293284
17	43295117	43295260
17	43296666	43296839
17	43299005	43299105
17	43300794	43300852
17	43303635	43303786
17	43305232	43305395
17	43307415	43307603
17	43309987	43311357
17	43313175	43313216
17	43314429	43314488
17	43321158	43321224
17	43323845	43323918

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2727 nt):
ATGAGAATTGGACTTCTGTGGCTCGTCCCTCTCTTCACGCTCACTGAGGGCACCGATGGCTTCCTGCAGC AGAAAAATGATGGCCGAAGAACAAAAGAAATTGTCAGTATGGTTGAGGAAAGGCATCCAGTCCACGAGTA TGAGGTGCTACTGCAGGTGACATACAGAGATCCAGAGGAGAAGAGAGAACTGAAGAGATTTCTGAAGCTC TTGAAATCTCCGTCGCCGAGTTTACGTGGTCCCAGCAAGATCATCAGAGTGAAGGCCACCACATACTGCA GAAGCCGAAAAGGGTTCCTGGAGTGTGCCTGCGAAGACAGCTATACGTGGTTTCCTCCCTCCTGCCTTGA CCCCCAGAACTGCTGCCTTCACACAACTGGACCCGTCCCAAGCTGCAATTGCTCTCTCAGAGGCCTCAGG CAGAGCATTAATTTCTGTGAGAGAGCAAAAGTTTGGGGCACTTTTGAAATCGATGAAAAATTTCCTGAAG ACCTTTGGAATTCATCATCTGATGTATATGCCCACTACACAGTTGGAATTGAAAATCAACTTAAAGAAGC GTACAGAAGAGTCCATGGTTTTGAGTCAGTTCGGGTCACCCAATTTCGGAAGGGAAGCATCGTTGTTGGC TACGAAGTGACCGGCTCCACTAGCCCTCCAGAACTCCTCTTTGCCATTGAACAGGAGGCCGAAAAGGCAC AGGAGGCCCTAAGGAGGCAGTTTCCAGTCAAATATGGCTCTTTTCGAGTATTCGGGAAAGCTCCGTGTAA CAGCATCTCCTTTGGATTCGGGTCTGAGAATGATGAATATACTGTGCCCTGCAGCAGTGGCTTCACAGGA AGCATGACGGTCAGGTGCCAGTCCTCTGGGTGGCAGATCACCAGGGAGTCCTGTGTGCTTTCTCAGCTGG AAGAACTGAAGAAGGAGCTCAGGATGATCGCAGGCAAGATCACAGAGGCGGGTGTGGCATCTTTGGTGCA AAACCTTTCCACCATCCTTTTGCAAAGTCCATCGACCACAGTTGGGAACCTGGGCTCTGTGGTGTCACTT CTGAGCAACATTTCATCCCTGTCGCTGGCAAACTCTTTAACTGTGTCCAATCTGACACTGATGAACGTCA TCAACATAGCTGATCATATCCTGGATTCAGCCTCCATAACGAACTGGACAATTTTATTACAAGATGCAAA GGATGCCAGCTCCCAGCTACTAAAGACATTGGAAAGCATCAGTAGTCTCATCCCTTCCATGGCTCTGCCT CTTAATTTTTCTGGAAAATTCATTGACTGGAAAGGGACCCCAGTGACCCAAATCCAGAGCACACGGGGCT ACAACTATCAGATGGAAATGAGACAAAATGCCTCTCTGCCTATCCGAGGCCACGTGTTTATTGAACCAGA TCAATTCCAGAAATCGCATCCAAAGACTATTATCAGCATGGCCTCATTGACCTTTGGGGACATTCTACCC ATTACCCAGAGAGGAAATGCATGGGTCAATGGCCCAGTGATATCCACACTTATTCAAAACTATTCCATCA GCGAAATTTTCCTGAACTTTTCCAAAATAAAGGGAAACCTGACTCAGCCTCGCTGTGTGTTTTGGGATTT TAGCCAGTTGCAATGGAGCAATGCAGGCTGCCAACTGGTTAATGAAACTCTGGACACGGTACTGTGCCGA TGTAGTCACCTGACCTCTTTCTCCATGCTCATGTCACCCTTTGTCCCCTCTTCTGTTGTTCCTGTGGTAA AATGGATCACGTACATAGGGCTGAGCATCTCCATTGCAAGTCTAATCTTATGCTTGATCATCGAGTCTCT GTTTTGGAAGCAGACCAAGAGAAGCCAAACCTCCTACACACGCAACATTTGCCTGGTGAACATCGCCGTG TCACTCTTAATTGCTGATGTTTGGTTTATCATTGCTGCCACTGTGGACCCCTCTGTGAGTCCTTCTGGAG TCTGTGTGGCTGCGGTGTTCTTTACCCACTTTTTCTACCTTGCCGTATTCTTTTGGATGCTCGTTCTGGG CATCCTGCTGGCTTATCGAATTATCCTAGTGTTTCATCACATGGCTCTGACTACCATGATGGCTATTGGC TTTTGCCTAGGCTATGGGTGCCCTCTCCTTATATCCATCATCACCCTTGCTGTCACCCAACCTAGCAATA GCTATAAAAGGAACGATGTGTGTTGGCTTAACTGGTCTGACAAGAGCAAACCTCTCTTGGCGTTCGTTGT TCCCGCGTTGACTATTGTGGCTGTGAACTTGGTTGTGGTGTTGCTGGTCCTCAGGAAGCTTTGGAGGCCA GCAGTTGGAGAAAGACTGAATCAGGATGACAAGGCCACTGCCATCCGCATGGGAAAGAGCCTCCTCGTGC TGACCCCGTTGCTAGGGCTCACCTGGGGCTTTGGCATAGGAACAATGGCGAACAGCCACAATCTGGCTTG GCATGTTCTTTTTGCTTTACTCAATGCTTTCCAGGGATTTTTCATCTTCTGTTTTGGAATTCTCCTGGAT ACCAAGCTGCGGCAACTTCTGTCCAACAAGTTGACTACATTAAGTTCATGGAAGCAAACATCAAAACGGA ACGCCTCAGATACAGTTACTCAGCCGAAATGCTTAAGGACATTCAACATACTACAGCACAGAGGCATGTA TGCACTTTCTCATACTGGAGATTCGTCCAGTGACATCACATTAACCCAGTTTCTATCAACCGAATAA
Translation (908 aa):
MRIGLLWLVPLFTLTEGTDGFLQQKNDGRRTKEIVSMVEERHPVHEYEVLLQVTYRDPEEKRELKRFLKL LKSPSPSLRGPSKIIRVKATTYCRSRKGFLECACEDSYTWFPPSCLDPQNCCLHTTGPVPSCNCSLRGLR QSINFCERAKVWGTFEIDEKFPEDLWNSSSDVYAHYTVGIENQLKEAYRRVHGFESVRVTQFRKGSIVVG YEVTGSTSPPELLFAIEQEAEKAQEALRRQFPVKYGSFRVFGKAPCNSISFGFGSENDEYTVPCSSGFTG SMTVRCQSSGWQITRESCVLSQLEELKKELRMIAGKITEAGVASLVQNLSTILLQSPSTTVGNLGSVVSL LSNISSLSLANSLTVSNLTLMNVINIADHILDSASITNWTILLQDAKDASSQLLKTLESISSLIPSMALP LNFSGKFIDWKGTPVTQIQSTRGYNYQMEMRQNASLPIRGHVFIEPDQFQKSHPKTIISMASLTFGDILP ITQRGNAWVNGPVISTLIQNYSISEIFLNFSKIKGNLTQPRCVFWDFSQLQWSNAGCQLVNETLDTVLCR CSHLTSFSMLMSPFVPSSVVPVVKWITYIGLSISIASLILCLIIESLFWKQTKRSQTSYTRNICLVNIAV SLLIADVWFIIAATVDPSVSPSGVCVAAVFFTHFFYLAVFFWMLVLGILLAYRIILVFHHMALTTMMAIG FCLGYGCPLLISIITLAVTQPSNSYKRNDVCWLNWSDKSKPLLAFVVPALTIVAVNLVVVLLVLRKLWRP AVGERLNQDDKATAIRMGKSLLVLTPLLGLTWGFGIGTMANSHNLAWHVLFALLNAFQGFFIFCFGILLD TKLRQLLSNKLTTLSSWKQTSKRNASDTVTQPKCLRTFNILQHRGMYALSHTGDSSSDITLTQFLSTE

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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