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Report for CCDS27975.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27975.1 Public Mus musculus 16 Clxn 23 108 98 CCDS HistoryNCBI Gene:66793Re-query CCDS DB by CCDS ID:27975.1Re-query CCDS DB by GeneID:66793See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27975.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090277.2 ENSMUSP00000087744.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090277.2Link to Ensembl Protein Viewer:ENSMUSP00000087744.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000090277Re-query CCDS DB by Protein ID:ENSMUSP00000087744
Original member Current member NCBI NM_025769.3 NP_080045.1 Accepted alive Link to Nucleotide Sequence:NM_025769.3Link to Protein Sequence:NP_080045.1Re-query CCDS DB by Nucleotide ID:NM_025769Re-query CCDS DB by Protein ID:NP_080045Link to BLAST:NP_080045.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080045.1 212 Q9D3N2-1 212 100% 0 0

Chromosomal Locations for CCDS 27975.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 14906755 14906812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14916826 14916984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14917643 14917747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14920295 14920446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14920781 14920885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14924083 14924142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGAACAGAAAGAAGCTGCAGAAGTTGACGGACACCTTAACTAAAAATTGCAAGCACTTTGACAAATTTG
AGGTGAAATGTCTTATAACACTTTTCTATAATTTGGTGGGAGACGTAGCAGAGAGGCCAGGAGTAGTCAC
CGGACTAGATCGTAATGTATTTCGGAACATCTTGCATGTGACATTTGGAATGACAGATGACATGATTATG
GACAGAGTATTTCGAGGCTTTGATAAAGACAATGATGGCTGTATAAGCGTATCAGAGTGGATTCATGGAT
TATCACTGTTTCTTCGAGGGACTTTAGATGAAAAAATGAAATATTGCTTTGAAGTGTTTGATCTGAATGG
TGATGGCTTCATTTCAAAGGAGGAGATGTTCCACATGCTGAAGAACAGCCTTCTCAAGCAGCCCTCTGAG
GAGGACCCTGATGAAGGGATTAAAGATTTGGTTGAAATTACACTTAAGAAAATGGACCATGACCATGATG
GGAAGCTGTCTTTTGTAGACTATGAGAAGGCTGTGAGAGAAGAGAATCTCCTGCTGGAAGCCTTTGGGCC
TTGCCTGCCTGATCCAAAGAGCCAGATGGAATTTGAAGCCCAAGTATTCAAAGATCCAAATGAATTTAAT
GATATGTGA

Translation (212 aa):
MNRKKLQKLTDTLTKNCKHFDKFEVKCLITLFYNLVGDVAERPGVVTGLDRNVFRNILHVTFGMTDDMIM
DRVFRGFDKDNDGCISVSEWIHGLSLFLRGTLDEKMKYCFEVFDLNGDGFISKEEMFHMLKNSLLKQPSE
EDPDEGIKDLVEITLKKMDHDHDGKLSFVDYEKAVREENLLLEAFGPCLPDPKSQMEFEAQVFKDPNEFN
DM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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