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Report for CCDS27648.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27648.1 Public Mus musculus 15 Gtpbp1 23 108 98 CCDS HistoryNCBI Gene:14904Re-query CCDS DB by CCDS ID:27648.1Re-query CCDS DB by GeneID:14904See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27648.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046463.9 ENSMUSP00000043575.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046463.9Link to Ensembl Protein Viewer:ENSMUSP00000043575.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000046463Re-query CCDS DB by Protein ID:ENSMUSP00000043575
Original member Current member NCBI NM_013818.2 NP_038846.2 Accepted alive Link to Nucleotide Sequence:NM_013818.2Link to Protein Sequence:NP_038846.2Re-query CCDS DB by Nucleotide ID:NM_013818Re-query CCDS DB by Protein ID:NP_038846Link to BLAST:NP_038846.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038846.2 668 O08582 668 100% 0 0

Chromosomal Locations for CCDS 27648.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 79690907 79691098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79694156 79694267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79706992 79707172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79707695 79708043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79712096 79712219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79713364 79713478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79715847 79715991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79716086 79716268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79716983 79717118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79717595 79717773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79719028 79719228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79720010 79720099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2007 nt):
ATGGCGGCGGAGCGGAGTCGCTCCCCGGTCGACTCGCCGGTGCCGGCCTCGATGTTCGCCCCCGAGCCTA
GCTCTCCGGGGGCGGCTCGGGCCGCCGCGGCCGCGGCCCGACTCCATGGCGGCTTCGATTCTGACTGCAG
CGAGGACGGCGAGGCGCTCAACGGCGAGCCGGAGCTGGACCTCACCAGCAAGCTGGTTCTAGTGAGCCCT
ACATCAGAGCAGTATGACAGCCTACTTCGGCAGATGTGGGAGAGGATGGACGAGGGATGCGGAGAGACCA
TATATGTCATTGGGCAGGGATCAGATGGGACTGAGTACGGGCTGAGTGAAGCTGACATGGAGGCCTCCTA
CGCCACCGTGAAGAGCATGGCGGAGCAGATAGAGGCTGACGTCATCCTCTTACGAGAACGTCAAGAAGCG
GGCGGCCGTGTGCGTGATTACCTAGTCAGGAAACGAGTTGGAGACAATGACTTCCTGGAGGTCAGGGTGG
CAGTGGTGGGCAACGTGGATGCTGGCAAAAGCACACTCCTGGGAGTCCTAACACACGGGGAGCTGGACAA
TGGCCGTGGCTTTGCCCGCCAAAAACTCTTTCGCCACAAACATGAGATTGAATCTGGTCGAACCAGCAGT
GTGGGCAATGACATTCTGGGCTTTGACAGCGAAGGCAATGTAGTGAACAAACCCGACAGCCATGGTGGCA
GCCTCGAATGGACAAAGATCTGTGAGAAGTCCTCTAAAGTGATCACCTTCATCGACTTGGCTGGCCACGA
GAAGTACCTTAAGACCACTGTTTTTGGCATGACTGGCCACTTGCCTGACTTCTGCATGCTCATGGTGGGC
AGCAATGCTGGCATTGTGGGGATGACCAAGGAGCATCTGGGCTTGGCATTGGCACTCAATGTACCTGTGT
TTGTGGTTGTCACCAAGATTGACATGTGTCCTGCCAACATCCTTCAAGAAACCCTGAAGCTGCTACAGCG
CCTGCTGAAGTCACCAGGCTGCCGGAAGATCCCTGTCCTGGTGCAGAGCAAAGATGATGTGATTGTCACA
GCCTCCAACTTCAGCTCTGAGAGGATGTGCCCGATATTCCAGATCTCCAATGTCACAGGTGAGAACCTTG
ACCTGCTCAAGATGTTCCTCAACCTCCTGTCCCCCCGCACCAGCTACCGGGAGGAGGAGCCTGCTGAGTT
CCAGATAGATGACACCTACTCTGTCCCTGGCGTGGGGACAGTGGTGTCTGGGACCACCCTGCGGGGCCTG
ATCAAACTGAACGACACACTGCTGCTGGGCCCAGACCCCTTGGGGAACTTCCTGTCCATTGCTGTCAAGT
CAATCCATCGCAAACGTATGCCAGTCAAGGAGGTGCGCGGGGGCCAGACAGCCTCCTTTGCACTGAAGAA
GATAAAGCGCTCATCCATCCGGAAAGGCATGGTGATGGTTTCCCCACGCCTGAATCCCCAGGCCTCCTGG
GAGTTTGAGGCTGAGATCCTTGTCCTCCACCACCCCACCACAATTAGTCCACGATACCAAGCCATGGTAC
ACTGTGGGAGCATCCGGCAAACAGCTACAATTCTGAGCATGGATAAAGACTGTCTGCGCACAGGAGACAA
GGCCACTGTCCACTTCCGCTTCATCAAGACCCCAGAGTATCTGCACATAGACCAGCGGTTGGTGTTCCGG
GAAGGTCGAACCAAGGCTGTTGGCACCATCACCAAGCTCCTCCAGACAACCAACAACTCCCCCATGAACT
CCAAGCCCCAGCAGATTAAAATGCAGTCCACAAAAAAGGGTCCCCTGAGCAAACGAGAGGAAGGAGGTCC
ATGTGGGGTGCCGGCGGCAGGGGGACCCCCGACTGGAGATGAAGCTTCCTCACTAGGGACTGCACAGGCT
GCCTCAACCAGTGGGCTCCAGCCACAGCCCAAGCCCAGCAGTGGGGGCCGGCGACGAGGGGGCCAGCGCC
ACAAGGTGAAGTCGGGAGCCTGTGTGACTCCTGCCAGCGGCTGCTGA

Translation (668 aa):
MAAERSRSPVDSPVPASMFAPEPSSPGAARAAAAAARLHGGFDSDCSEDGEALNGEPELDLTSKLVLVSP
TSEQYDSLLRQMWERMDEGCGETIYVIGQGSDGTEYGLSEADMEASYATVKSMAEQIEADVILLRERQEA
GGRVRDYLVRKRVGDNDFLEVRVAVVGNVDAGKSTLLGVLTHGELDNGRGFARQKLFRHKHEIESGRTSS
VGNDILGFDSEGNVVNKPDSHGGSLEWTKICEKSSKVITFIDLAGHEKYLKTTVFGMTGHLPDFCMLMVG
SNAGIVGMTKEHLGLALALNVPVFVVVTKIDMCPANILQETLKLLQRLLKSPGCRKIPVLVQSKDDVIVT
ASNFSSERMCPIFQISNVTGENLDLLKMFLNLLSPRTSYREEEPAEFQIDDTYSVPGVGTVVSGTTLRGL
IKLNDTLLLGPDPLGNFLSIAVKSIHRKRMPVKEVRGGQTASFALKKIKRSSIRKGMVMVSPRLNPQASW
EFEAEILVLHHPTTISPRYQAMVHCGSIRQTATILSMDKDCLRTGDKATVHFRFIKTPEYLHIDQRLVFR
EGRTKAVGTITKLLQTTNNSPMNSKPQQIKMQSTKKGPLSKREEGGPCGVPAAGGPPTGDEASSLGTAQA
ASTSGLQPQPKPSSGGRRRGGQRHKVKSGACVTPASGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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