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Report for CCDS27247.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27247.1 Public Mus musculus 14 Bin3 23 108 98 CCDS HistoryNCBI Gene:57784Re-query CCDS DB by CCDS ID:27247.1Re-query CCDS DB by GeneID:57784See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27247.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022680.8 ENSMUSP00000022680.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022680.8Link to Ensembl Protein Viewer:ENSMUSP00000022680.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022680Re-query CCDS DB by Protein ID:ENSMUSP00000022680
Original member Current member NCBI NM_021328.4 NP_067303.1 Accepted alive Link to Nucleotide Sequence:NM_021328.4Link to Protein Sequence:NP_067303.1Re-query CCDS DB by Nucleotide ID:NM_021328Re-query CCDS DB by Protein ID:NP_067303Link to BLAST:NP_067303.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067303.1 253 Q9JI08 253 100% 0 0

Chromosomal Locations for CCDS 27247.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 70100189 70100196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70118604 70118652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70123841 70123881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70124183 70124244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70128850 70128986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70129518 70129558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70134450 70134591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70134736 70134870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70137139 70137285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGAGCTGGATTCCATTTAAGATCGGGCAGCCCAAGAAGCAGATTGTTTCCAAAACAGTGGAGAGAGACT
TTGAAAGGGAGTATGGAAAACTGCAGCAGCTGGAAGAGCAAACTAAACGCCTGCAGAAGGACATGAAGAA
AAGCACCGATGCCGACCTGGCCATGTCCAAATCTGCTGTGAAGATATCCCAGGACCTACTGTCCAACCCA
CTGTGTGAGCAGGACCAGGACTTTCTGCACATGGTGACAGCCCTAGACACAGCCATGAAACGGATGGATG
CCTTCAACCAGGAGAAGGTGAACCAGATCCAAAAGACAGTGATTGAACCTCTGAAAAAGTTCAGCAGCAT
ATTCCCAAGCCTCAACATGGCGGTGAAGCGGCGGGAGCAGGCCTTGCAGGACTACGGGAGGCTGCAGGCC
AAGGTGGAGAAGTACGAGGAAAAGGAGAAGACTGGCCCCGTGCTGGCCAAGCTCCACCAGGCCCGAGAAG
AGCTACGTCCTGTGCGGGAAGACTTTGAGGCCAAGAATAAACAACTCCTGGATGAGATGCCGCGGTTCTA
TGGCAGCCGACTTGACTATTTCCAACCCAGCTTTGAGTCCCTGATCCGGGCACAGGTTATATACTACTCA
GAAATGCATAAGATCTTTGGAGACCTGACCCAGCAGCTTGACCAGCCAGGCCACTCAGATGAGCAGCGAG
AGCGGGAAAATGAGACCAAACTAAGTGAACTCCGAGCCCTCTCCATCGTGGCTGATGACTGA

Translation (253 aa):
MSWIPFKIGQPKKQIVSKTVERDFEREYGKLQQLEEQTKRLQKDMKKSTDADLAMSKSAVKISQDLLSNP
LCEQDQDFLHMVTALDTAMKRMDAFNQEKVNQIQKTVIEPLKKFSSIFPSLNMAVKRREQALQDYGRLQA
KVEKYEEKEKTGPVLAKLHQAREELRPVREDFEAKNKQLLDEMPRFYGSRLDYFQPSFESLIRAQVIYYS
EMHKIFGDLTQQLDQPGHSDEQRERENETKLSELRALSIVADD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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