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Report for CCDS27138.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27138.1 Public Mus musculus 14 Mcpt9 23 108 98 CCDS HistoryNCBI Gene:17232Re-query CCDS DB by CCDS ID:27138.1Re-query CCDS DB by GeneID:17232See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27138.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095798.1 ENSMUSP00000093476.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095798.1Link to Ensembl Protein Viewer:ENSMUSP00000093476.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000095798Re-query CCDS DB by Protein ID:ENSMUSP00000093476
Original member Current member NCBI NM_010782.3 NP_034912.3 Accepted alive Link to Nucleotide Sequence:NM_010782.3Link to Protein Sequence:NP_034912.3Re-query CCDS DB by Nucleotide ID:NM_010782Re-query CCDS DB by Protein ID:NP_034912Link to BLAST:NP_034912.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034912.3 246 O35164 246 100% 0 0

Chromosomal Locations for CCDS 27138.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 56026896 56027039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56027446 56027700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56027899 56028034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56028564 56028714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56029214 56029268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGCAGGCCCTACTATTCCTGATGGCACTTCTCTTGCCTTCTAGGGCTGGAGCTGAGGAGATTATTGGTG
GT
GTTGAGTCTGAACCACACTCCCGACCTTACATGGCCTATGTGAATACCTTCAGTAAGAAAGGTTATGT
G
GCAATCTGTGGTGGGTTTCTCATAGCCCCCCAATTTGTGATGACTGCTGCACACTGTAGTGGAAGAAGA
ATG
ACTGTCACCCTTGGAGCTCATAATGTGAGAAAGAGAGAATGCACACAGCAGAAGATAAAAGTTGAAA
AG
TACATCTTGCCTCCAAATTACAATGTGTCTTCCAAGTTCAATGACATCGTATTACTGAAGCTTAAAAA
G
CAAGCTAACTTGACTTCTGCTGTGGATGTAGTTCCCCTGCCTGGCCCCTCTGACTTTGCCAAGCCTGGG
ACG
ATGTGTTGGGCAGCTGGCTGGGGGCGAACTGGAGTGAAAAAAAGTATCTCACATACCCTGAGAGAGG
TA
GAACTGAAAATCGTGGGGGAAAAGGCCTGTAAAATATTTAGGCATTACAAGGATAGCCTCCAGATCTG
T
GTGGGCAGTTCCACAAAGGTGGCATCAGTATACATGGGAGACTCTGGAGGACCTCTACTGTGTGCTGGG
GTG
GCCCATGGTATTGTATCTTCTGGACGCGGAAATGCAAAGCCCCCTGCAATCTTCACCCGAATCTCCC
CA
CATGTGCCCTGGATTAACAGAGTCATAAAGGGCGAGTAG


Translation (246 aa):
MQALLFLMALLLPSRAGAEEIIGGVESEPHSRPYMAYVNTFSKKGYVAICGGFLIAPQFVMTAAHCSGRR
M
TVTLGAHNVRKRECTQQKIKVEKYILPPNYNVSSKFNDIVLLK
LKKQANLTSAVDVVPLPGPSDFAKPG
T
MCWAAGWGRTGVKKSISHTLREVELKIVGEKACKIFRHYKDSLQICVGSSTKVASVYM
GDSGGPLLCAG
V
AHGIVSSGRGNAKPPAIFTRISPHVPWINRVIKGE




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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