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Report for CCDS26578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26578.1 Public Mus musculus 13 Isca1 23 108 98 CCDS HistoryNCBI Gene:69046Re-query CCDS DB by CCDS ID:26578.1Re-query CCDS DB by GeneID:69046See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26578.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057115.6 ENSMUSP00000054858.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057115.6Link to Ensembl Protein Viewer:ENSMUSP00000054858.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000057115Re-query CCDS DB by Protein ID:ENSMUSP00000054858
Original member Current member NCBI NM_026921.4 NP_081197.1 Accepted alive Link to Nucleotide Sequence:NM_026921.4Link to Protein Sequence:NP_081197.1Re-query CCDS DB by Nucleotide ID:NM_026921Re-query CCDS DB by Protein ID:NP_081197Link to BLAST:NP_081197.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081197.1 129 Q9D924 129 100% 0 0

Chromosomal Locations for CCDS 26578.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 59756855 59757003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59758890 59758995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59762742 59762795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59769624 59769704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (390 nt):
ATGTCGGCGTCGTTGGTCCGCGCCACCGTGCGGGCTGTGAGCAAGAGAAAACTGCAGCCCACGCGGGCGG
CC
CTCACACTGACCCCCTCTGCTGTAAACAAGATAAAACAACTTCTTAAAGACAAACCTGAGCATGTGGG
T
CTGAAAGTTGGCGTGCGAACCAGGGGCTGTAATGGCCTCTCTTACAGCCTGGAGTACACAAAGACAAAA
GGA
GATTCTGATGAAGAAGTTATTCAAGATGGAGTCCGAGTGTTCATCGAGAAGAAAGCACAGCTAACCC
TG
TTAGGAACAGAGATGGACTATGTGGAAGACAAACTGTCCAGTGAGTTTGTGTTCAATAACCCCAACAT
C
AAGGGAACCTGTGGCTGCGGTGAGAGCTTTCACGTGTGA


Translation (129 aa):
MSASLVRATVRAVSKRKLQPTRAALTLTPSAVNKIKQLLKDKPEHVGLKVGVRTRGCNGLSYSLEYTKTK
G
DSDEEVIQD
GVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFHV



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser