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Report for CCDS26510.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26510.1 Public Mus musculus 13 Spin1 23 108 98 CCDS HistoryNCBI Gene:20729Re-query CCDS DB by CCDS ID:26510.1Re-query CCDS DB by GeneID:20729See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26510.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095797.5 ENSMUSP00000093473.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095797.5Link to Ensembl Protein Viewer:ENSMUSP00000093473.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000095797Re-query CCDS DB by Protein ID:ENSMUSP00000093473
Original member NCBI NM_001283028.1 NP_001269957.1 Updated not alive Link to Nucleotide Sequence:NM_001283028.1Link to Protein Sequence:NP_001269957.1Re-query CCDS DB by Nucleotide ID:NM_001283028Re-query CCDS DB by Protein ID:NP_001269957
Current member NCBI NM_001283028.2 NP_001269957.1 Accepted alive Link to Nucleotide Sequence:NM_001283028.2Link to Protein Sequence:NP_001269957.1Re-query CCDS DB by Nucleotide ID:NM_001283028Re-query CCDS DB by Protein ID:NP_001269957Link to BLAST:NP_001269957.1
Original member NCBI NM_001283029.1 NP_001269958.1 Updated not alive Link to Nucleotide Sequence:NM_001283029.1Link to Protein Sequence:NP_001269958.1Re-query CCDS DB by Nucleotide ID:NM_001283029Re-query CCDS DB by Protein ID:NP_001269958
Current member NCBI NM_001283029.2 NP_001269958.1 Accepted alive Link to Nucleotide Sequence:NM_001283029.2Link to Protein Sequence:NP_001269958.1Re-query CCDS DB by Nucleotide ID:NM_001283029Re-query CCDS DB by Protein ID:NP_001269958Link to BLAST:NP_001269958.1
Original member NCBI NM_146043.4 NP_666155.1 Updated not alive Link to Nucleotide Sequence:NM_146043.4Link to Protein Sequence:NP_666155.1Re-query CCDS DB by Nucleotide ID:NM_146043Re-query CCDS DB by Protein ID:NP_666155
Current member NCBI NM_146043.5 NP_666155.1 Accepted alive Link to Nucleotide Sequence:NM_146043.5Link to Protein Sequence:NP_666155.1Re-query CCDS DB by Nucleotide ID:NM_146043Re-query CCDS DB by Protein ID:NP_666155Link to BLAST:NP_666155.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269957.1 262 Q61142-1 262 100% 0 0
NP_001269958.1 262 Q61142-1 262 100% 0 0
NP_666155.1 262 Q61142-1 262 100% 0 0

Chromosomal Locations for CCDS 26510.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 51123237 51123288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51127925 51127973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51139357 51139610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51144302 51144535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 51148962 51149161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGAAGACCCCATTCGGGAAGACACCTGGCCAACGGTCCAGAGCTGATGCAGGCCATGCTGGAGTATCTG
CAAACATGATGAAGAAGAGGACATCTCACAAAAAACATCGGACCAGTGTGGGACCAAGCAAGCCTGTGTC
CCAACCCCGGCGGAACATCGTAGGCTGCAGGATCCAGCATGGATGGAGAGAGGGCAATGGCCCTGTTACC
CAGTGGAAGGGGACTGTCCTGGACCAGGTGCCTGTGAATCCTTCCCTGTATCTTATAAAGTACGATGGAT
TTGACTGTGTTTATGGACTAGAACTTAATAAGGATGAAAGAGTTTCTGCACTGGAAGTCCTCCCTGATAG
AGTTGCAACATCTCGGATCAGCGATGCACACTTAGCGGACACAATGATCGGCAAAGCAGTGGAGCACATG
TTTGAGACAGAGGACGGCTCTAAAGATGAGTGGAGGGGGATGGTCTTGGCACGGGCGCCTGTCATGAACA
CATGGTTTTACATCACCTATGAGAAAGACCCTGTCTTGTACATGTACCAGCTCCTCGATGACTACAAAGA
AGGCGACCTCCGCATCATGCCTGATTCCAATGATTCGCCTCCAGCAGAAAGGGAGCCAGGAGAAGTTGTG
GACAGCCTGGTAGGCAAGCAAGTGGAATATGCCAAAGAAGACGGCTCGAAAAGGACTGGCATGGTCATCC
ACCAAGTAGAGGCCAAGCCCTCTGTCTATTTCATCAAGTTTGATGACGATTTCCATATTTACGTCTACGA
TTTGGTGAAAACATCCTAG

Translation (262 aa):
MKTPFGKTPGQRSRADAGHAGVSANMMKKRTSHKKHRTSVGPSKPVSQPRRNIVGCRIQHGWREGNGPVT
QWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVATSRISDAHLADTMIGKAVEHM
FETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSPPAEREPGEVV
DSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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