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Report for CCDS26472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26472.1 Public Mus musculus 13 Gcm2 16 104 75 CCDS HistoryNCBI Gene:107889Re-query CCDS DB by CCDS ID:26472.1Re-query CCDS DB by GeneID:107889See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Sequence IDs included in CCDS 26472.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000021791 ENSMUSP00000021791 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021791Link to Ensembl Protein Viewer:ENSMUSP00000021791Re-query CCDS DB by Nucleotide ID:ENSMUST00000021791Re-query CCDS DB by Protein ID:ENSMUSP00000021791
Original member Current member NCBI NM_008104.2 NP_032130.2 Accepted alive Link to Nucleotide Sequence:NM_008104.2Link to Protein Sequence:NP_032130.2Re-query CCDS DB by Nucleotide ID:NM_008104Re-query CCDS DB by Protein ID:NP_032130Link to BLink:NP_032130.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032130.2 504 O09102 504 98.6111% 0 7

Chromosomal Locations for CCDS 26472.1

Assembly GRCm38.p2 (GCF_000001635.22)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 13Link to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 41102757 41103689 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41104569 41104694 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41105411 41105523 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41105649 41105901 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41109865 41109954 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGCCAGCAGACAGCACGCAGGACGAGGATGCTGTGCTCTCCTACGGGATGAAACTCACGTGGGACATCA
AT
GACCCACAGATGCCTCAGGAACCAACCCACTTTGACCACTTCCGGGAGTGGCCTGATGGCTACGTGCG
C
TTCATCTACAGCAGCCAGGAGAAGAAGGCTCAGCGCCACCTGAGTGGCTGGGCCATGCGCAACACCAAC
AAC
CACAATGGCCACATCCTCAAGAAGTCCTGCCTGGGCGTGGTGGTGTGTGCACGCGCTTGCGCCCTGA
AG
GATGGCTCGCACCTGCAGCTGAGGCCAGCCATCTGTGACAAGGCCCGGCTGAAGCAACAAAAGAAAGC
T
TGCCCCAACTGTCACTCACCTTTGGAGCTGGTTCCTTGCCGAGGGCACAGCGGATACCCTGTCACCAAC
TTC
TGGAGACTTGATGGCAATGCAATTTTTTTTCAGGCCAAAGGAGTTCATGATCACCCCAGACCAGAGA
GT
AAGTCAGAGACAGAAGGCAGAAGAAGTGCCCTCAAGAGACAGATGGCTTCTTTCTACCAACCCCAGAA
A
AGGAGATCAGGGGAGCCTGAGGCAAGAAGCACTCAGGACATCAGGGGACACCTCAATAGCACGGCTGCC
CTG
GAACCCACAGAACTATTTGATATGACTGCTGATACCAGCTTCCCTATTCCAGGGCAGCCCTCCCCTT
CG
TTCCCAAACTCTGATGTCTACAGAGTTACCTGTGACCTGCCCACCTTTCAAGGAGATATAATACTGCC
C
TTTCAGAAATATCCAAATCCAAGCATTTATTTCCCCGGGCCACCTTGGGGCTATGAGTTGGCAAGTTCT
GGG
GTTACAGGTTCGAGTCCATATTCCACCCTGTATAAAGATTCCTCCGAGGTCCCCGATGACCCAGATT
GG
ATTCCTCTAAACTCACTACAGTATAATGTCAGTTCCTATGGCAGCTATGAGAGAACCTTGGATTTCAC
A
GCTAGGTATCATAGCTGGAAACCAACACACGGGAAGCCCAGCCTTGAGGAGAAGGTTGACTGTGAGCAA
TGC
CAGGCTGTGCCCACATTGCCTTATTACAACCTAGAGCTGCCCTGCAGGTACCTGCCAGTGCCAGCAG
CG
GGTAGCCAGGCTCTGCAGACAGTAATCACCACCACAGTGGCTTACCAGGCCTACCAGCACCCTGCTCT
G
AAACACGGTGACAGCATGCAGGAGGTTAGCAGCCTTGCCAGCTGCACCTATGCCTCGGAAAACCTCCCA
ATG
CCCATCTATCCACCAGCCTTAGACCCTCAAGAGGGAGTCATTCAGGCAGTCTCTCCTTCAGGGAGAG
CC
CCTCTGAAAGTCCCTGGAGACTGCCAGGCCCCCAGACCCACTCTGGATTTTCCTCAAGAAGCAGATCC
C
TCCGGGACAGATGGAGCAGATGTGTGGGATGTGTGTCTGTCTGGGGTGGGCTCTGTGATGGGTTACTTA
GAT
AGGACAGGGCAGCCCTTTAGCTTTGACAATGAGGACTTTTAG


Translation (504 aa):
MPADSTQDEDAVLSYGMKLTWDINDPQMPQEPTHFDHFREWPDGYVRFIYSSQEKKAQRHLSGWAMRNTN
N
HNGHILKKSCLGVVVCARACALKDGSHLQLRPAICDKARLKQQ
KKACPNCHSPLELVPCRGHSGYPVTN
F
WRLDGNAIFFQ
AKGVHDHPRPESKSETEGRRSALKRQMASFYQPQKRRSGEPEARSTQDIRGHLNSTAA
L
EPTELFDMTADTSFPIPGQPSPSFPNSDVYRVTCDLPTFQGDIILPFQKYPNPSIYFPGPPWGYELASS
G
VTGSSPYSTLYKDSSEVPDDPDWIPLNSLQYNVSSYGSYERTLDFTARYHSWKPTHGKPSLEEKVDCEQ
C
QAVPTLPYYNLELPCRYLPVPAAGSQALQTVITTTVAYQAYQHPALKHGDSMQEVSSLASCTYASENLP
M
PIYPPALDPQEGVIQAVSPSGRAPLKVPGDCQAPRPTLDFPQEADPSGTDGADVWDVCLSGVGSVMGYL
D
RTGQPFSFDNEDF




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