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Report for CCDS26456.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26456.1 Public Mus musculus 13 F13a1 23 108 98 CCDS HistoryNCBI Gene:74145Re-query CCDS DB by CCDS ID:26456.1Re-query CCDS DB by GeneID:74145See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26456.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037491.9 ENSMUSP00000048667.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037491.9Link to Ensembl Protein Viewer:ENSMUSP00000048667.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000037491Re-query CCDS DB by Protein ID:ENSMUSP00000048667
Original member Current member EBI ENSMUST00000164727.7 ENSMUSP00000128316.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164727.7Link to Ensembl Protein Viewer:ENSMUSP00000128316.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164727Re-query CCDS DB by Protein ID:ENSMUSP00000128316
Original member Current member NCBI NM_001166391.1 NP_001159863.1 Accepted alive Link to Nucleotide Sequence:NM_001166391.1Link to Protein Sequence:NP_001159863.1Re-query CCDS DB by Nucleotide ID:NM_001166391Re-query CCDS DB by Protein ID:NP_001159863Link to BLAST:NP_001159863.1
Original member Current member NCBI NM_028784.3 NP_083060.2 Accepted alive Link to Nucleotide Sequence:NM_028784.3Link to Protein Sequence:NP_083060.2Re-query CCDS DB by Nucleotide ID:NM_028784Re-query CCDS DB by Protein ID:NP_083060Link to BLAST:NP_083060.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159863.1 732 Q8BH61 732 100% 0 0
NP_083060.2 732 Q8BH61 732 100% 0 0

Chromosomal Locations for CCDS 26456.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 36868765 36868918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36877743 36877879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36892806 36892966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36897982 36898269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36905903 36906056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36916864 36916952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36918532 36918635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36943891 36944029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36946443 36946617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36968018 36968125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36971948 36972066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36988834 36989085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37025671 37025859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 37047357 37047486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2199 nt):
ATGTCAGATACTCCAGCAAGCACCTTTGGGGGGAGGCGAGCAGTCCCGCCCAATAACTCCAATGCTGCAG
AA
GTGGACCTCCCAACTGAGGAGCTACAAGGCCTGGTGCCAAGGGGTGTCAACCTGAAAGATTACCTGAA
T
GTCACAGCTGTTCACCTGTTCAAGGAGAGATGGGACAGTAACAAGATTGATCACCACACAGACAAATAT
GAC
AACAATAAGTTGATTGTCCGCAGAGGGCAGACCTTCTACATCCAGATTGACTTCAACCGTCCCTATG
AC
CCCAGGAAGGATCTCTTCAGAGTGGAATATGTCATTGGTCGCTACCCTCAGGAGAACAAGGGCACCTA
C
ATCCCTGTGCCTGTAGTGAAAGAGCTGCAAAGCGGAAAGTGGGGAGCCAAGGTTATCATGAATGAGGAC
CGG
TCGGTGCGACTTTCCGTTCAGTCTTCTCCGGAATGCATTGTGGGGAAATTCCGCATGTATGTTGCAG
TC
TGGACTCCCTATGGCATCCTGCGTACTCGAAGAGACCCAGAAACAGACACATATATTCTCTTCAACCC
T
TGGTGTGAAGAGGACGCTGTGTATCTGGATGATGAGAAGGAAAGAGAAGAGTACGTCCTGAATGACATT
GGA
GTGATATTTTATGGGGACTTCAAAGACATCAAGAGCAGAAGCTGGAGCTATGGCCAGTTCGAAGACG
GC
ATCCTGGATACTTGCTTGTATGTGATGGACAAAGCTGAGATGGACCTTTCTGGCAGAGGCAACCCCAT
C
AAAGTCAGCCGAGTTGGATCAGCAATGGTGAATGCCAAGGATGATGAAGGTGTTCTTGTTGGATCATGG
GAC
AATGTCTATGCCTACGGCATCCCTCCATCAGCCTGGACAGGAAGTGTTGACATTCTACTAGAATACA
GA
AGCTCGGAAACACCAGTCCGATATGGCCAGTGTTGGGTTTTTGCTGGTGTCTTTAACACATTTTTAAG
A
TGCCTTGGAATCCCTGCACGAGTCATTACCAATTACTTCTCGGCCCACGACAATGATGCCAATCTGCAA
ATG
GACATCTTCCTGGAAGAAGATGGGAATGTGAGCTCCAAACTCACCAAGGATTCGGTGTGGAACTACC
AC
TGCTGGAACGAAGCGTGGATGACAAGGCCTGATCTTCCTGTTGGATTTGGAGGCTGGCAAGCTGTGGA
C
AGCACACCCCAGGAAAACAGTGATGGCATGTACCGCTGTGGCCCTGCCTCTGTCCAAGCCGTTAAGCAT
GGC
CATGTCTGCTTCCAGTTTGATGCCCCGTTTGTTTTTGCAGAGGTCAACAGTGATCTTGTTTACATCA
CA
GCTAAGCAAGATGGCACTCACGTGGTGGAAGCCGTGGATGCCACCCATATCGGGAAGCTAATTGTGAC
C
AAGCAAATTGGAGGAGATGGCATGCAGGATATCACGGATACTTACAAATTTCAAGAAGGCCAAGAAGAA
GAG
AGACTAGCCCTTGAAACTGCTCTGATGTATGGAGCCAAGAAGACCCTCAACACTGAAGGTGTTGTCA
AA
TCAAGGTCTGATGTGACCATGAACTTTGATGTGGAAAATGCTGTGCTGGGAAAGGACTTCAAAGTGAC
T
ATCACCTTCCAGAACAATAGCTCCAATCTGTACACCATCCTGGCCTATCTTTCTGGCAACATCACCTTC
TAC
ACTGGGGTATCCAAGAAAGAGTTCAAGAAGGAGTCCTTTGAAGAGACGCTGGATCCCTTTTCCTCCA
AG
AAAAAGGAGGTGCTGGTCAGAGCGGGCGAGTACATGAGCCACCTTCTAGAACAGGGCTTCTTGCACTT
C
TTCGTCACGGCACGCATCAACGAGTCCAGGGATGTCCTGGCCAAACAAAAGTCCATAATACTGACTATC
CCC
AAGATCACCATCAAGGTCCGAGGTGCTGCCATGGTTGGCTCTGATATGGTTGTGACTGTTGAGTTCA
CT
AATCCTTTAAAAGAAACACTACAAAATGTCTGGATTCATTTGGATGGTCCTGGAGTGATGAGACCCAA
G
AGAAAGGTGTTCCGTGAAATCCGGCCCAACACCACGGTGCAGTGGGAAGAAGTCTGTCGGCCTTGGGTC
TCT
GGCCATCGGAAGCTGATTGCCAGCATGACCAGTGACTCCCTGAGACATGTGTATGGAGAGCTGGATC
TT
CAGATTCAAAGACGACCTACTATGTAA


Translation (732 aa):
MSDTPASTFGGRRAVPPNNSNAAEVDLPTEELQGLVPRGVNLKDYLNVTAVHLFKERWDSNKIDHHTDKY
D
NNKLIVRRGQTFYIQIDFNRPYDPRKDLFRVEYVI
GRYPQENKGTYIPVPVVKELQSGKWGAKVIMNED
R
SVRLSVQSSPECIVGKFRMYVAVWTPYGILRTRRDPETDTYILFNPWCE
EDAVYLDDEKEREEYVLNDI
G
VIFYGDFKDIKSRSWSYGQ
FEDGILDTCLYVMDKAEMDLSGRGNPIKVSRVGSAMVNAKDDEGVLVGSW
D
NVYAYGIPPSAWTGSVDILLEYRSSETPVRYGQCWVFAGVFNT
FLRCLGIPARVITNYFSAHDNDANLQ
M
DIFLEEDGNVSSKLTKDSV
WNYHCWNEAWMTRPDLPVGFGGWQAVDSTPQENSDGMYRCGPASVQAVKH
G
HVCFQFDAPFVFAE
VNSDLVYITAKQDGTHVVEAVDATHIGKLIVTKQIGGDGMQDITDTYKFQEGQEE
E
RLALETALMYGAKKTLNTEGVVKSRSDVTMNFDVENAVLGKDFKVTITFQNNSSNLYTILAYLSGNITF
Y
TGVSKKEFKKESFEETLDPFS
SKKKEVLVRAGEYMSHLLEQGFLHFFVTARINESRDVLAKQKSIILTI
P
KITIK
VRGAAMVGSDMVVTVEFTNPLKETLQNVWIHLDGPGVMRPKRKVFREIRPNTTVQWEEVCRPWV
S
GHRKLIASMTSDSLRHVYGELDLQIQRRPTM




Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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