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Report for CCDS26425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26425.1 Public Mus musculus 13 Foxc1 10 38.1 68 CCDS HistoryNCBI Gene:17300Re-query CCDS DB by CCDS ID:26425.1Re-query CCDS DB by GeneID:17300

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Sequence IDs included in CCDS 26425.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000062292 ENSMUSP00000052196 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062292Link to Ensembl Protein Viewer:ENSMUSP00000052196Re-query CCDS DB by Nucleotide ID:ENSMUST00000062292Re-query CCDS DB by Protein ID:ENSMUSP00000052196
Original member Current member EBI,WTSI OTTMUST00000001359 OTTMUSP00000000642 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000001359Link to Vega Protein Viewer:OTTMUSP00000000642Re-query CCDS DB by Nucleotide ID:OTTMUST00000001359Re-query CCDS DB by Protein ID:OTTMUSP00000000642
Original member Current member NCBI NM_008592.2 NP_032618.2 Accepted alive Link to Nucleotide Sequence:NM_008592.2Link to Protein Sequence:NP_032618.2Re-query CCDS DB by Nucleotide ID:NM_008592Re-query CCDS DB by Protein ID:NP_032618Link to BLink:NP_032618.2

Chromosomal Locations for CCDS 26425.1

Assembly GRCm38 (GCF_000001635.20)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 13Link to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13Link to Vega Genome Browser on chromosome 13

Chromosome Start Stop Links
13 31807208 31808869 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13Link to Vega Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternate exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGCAGGCGCGCTACTCGGTGTCCAGCCCCAACTCCCTGGGAGTGGTGCCCTACCTCGGCGGCGAGCAGA
GCTACTATCGCGCTGCCGCGGCGGCGGCCGGGGGCGGCTACACCGCCATGCCGGCCCCTATGAGCGTGTA
CTCGCACCCTGCTCACGCCGAGCAGTACCCGGGCAGCATGGCGCGCGCCTACGGGCCTTATACGCCGCAG
CCGCAGCCCAAGGACATGGTGAAGCCGCCCTACAGCTACATCGCTCTTATCACCATGGCCATCCAGAATG
CCCCGGACAAGAAGATCACTCTGAATGGCATCTACCAGTTCATCATGGACCGCTTCCCCTTCTATCGGGA
CAATAAGCAGGGCTGGCAGAACAGCATACGGCACAACCTCTCGCTCAACGAGTGCTTCGTCAAGGTGCCC
CGCGACGACAAGAAGCCAGGCAAGGGCAGCTACTGGACGCTCGACCCGGACTCCTACAACATGTTCGAGA
ACGGCAGCTTCCTGCGGCGGCGGCGGCGCTTCAAGAAGAAGGACGCAGTGAAGGACAAGGAGGAGAAGGG
CCGGCTGCACCTCCAAGAACCGCCACCGCCGCAGGCCGGCCGCCAGCCCGCGCCCGCGCCCCCGGAGCAG
GCCGAGGGCTCCGCTCCCGGGCCACAGCCGCCGCCCGTGCGCATCCAGGACATCAAGACGGAGAACGGTA
CGTGTCCCTCGCCTCCCCAGCCCCTGTCCCCGGCTGCCGCCCTAGGCAGCGGCAGCGCCGCCACAGTGCC
CAAAATCGAGAGCCCCGACAGCAGCAGCAGCAGCTTGTCGAGCGGGAGCAGCCCCCCGGGCAGCCTGCCG
TCGGCGCGGCCGCTCAGCCTGGACGCTGCAGAACCCGCGCCGCCGCCACAGCCTGCGCCGCCGCCGCATC
ACAGCCAGGGCTTCAGCGTGGACAACATCATGACGTCGCTGCGGGGGTCGCCGCAGGGTTCGGCCGCTGA
GCTCGGTTCCGGCCTCCTGGCCTCGGCGGCTGCGTCCTCGCGCGCGGGCATCGCGCCCCCGCTGGCGCTG
GGTGCCTACTCTCCGGGCCAGAGCTCCCTCTACAGCTCCCCCTGCAGCCAGAGCTCCAGTGCGGGCAGTT
CGGGCGGCGGGGGTGGCGGCGGCGGCGGAGGCGGCGGCAGCAGCAGCGCTGCGGGTACGGGGGGCGCCGC
CACTTACCACTGCAACCTGCAGGCTATGAGCCTGTACGCGGCGGGCGAGCGTGGCGGCCACTTGCAGGGT
CCGGCGGGAGGCGCGGGCAGCGCGGCGGTGGACGACCCCCTGCCCGACTACTCGCTGCCTCCAGCGACCA
GCAGCAGCTCTTCGTCCCTGAGTCATGGCGGGGGCGGCCAGGAGGCCAGCCACCACCCTGCATCCCACCA
GGGCCGACTCACCTCGTGGTACCTGAACCAGGCAGGTGGAGACCTGGGCCACTTGGCGAGCGCGGCGGCG
GCTGCGGCGGCCGCAGGCTACCCTGGCCAGCAGCAGAACTTCCACTCGGTGCGGGAAATGTTCGAGTCTC
AGCGGATCGGCTTGAACAACTCCCCGGTGAATGGGAATAGTAGCTGTCAGATGGCTTTCCCTGCCAGTCA
GTCTCTGTACCGCACGTCGGGGGCTTTCGTCTATGACTGTAGCAAATTCTGA

Translation (553 aa):
MQARYSVSSPNSLGVVPYLGGEQSYYRAAAAAAGGGYTAMPAPMSVYSHPAHAEQYPGSMARAYGPYTPQ
PQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQGWQNSIRHNLSLNECFVKVP
RDDKKPGKGSYWTLDPDSYNMFENGSFLRRRRRFKKKDAVKDKEEKGRLHLQEPPPPQAGRQPAPAPPEQ
AEGSAPGPQPPPVRIQDIKTENGTCPSPPQPLSPAAALGSGSAATVPKIESPDSSSSSLSSGSSPPGSLP
SARPLSLDAAEPAPPPQPAPPPHHSQGFSVDNIMTSLRGSPQGSAAELGSGLLASAAASSRAGIAPPLAL
GAYSPGQSSLYSSPCSQSSSAGSSGGGGGGGGGGGGSSSAAGTGGAATYHCNLQAMSLYAAGERGGHLQG
PAGGAGSAAVDDPLPDYSLPPATSSSSSSLSHGGGGQEASHHPASHQGRLTSWYLNQAGGDLGHLASAAA
AAAAAGYPGQQQNFHSVREMFESQRIGLNNSPVNGNSSCQMAFPASQSLYRTSGAFVYDCSKF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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