NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26223.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26223.1 Public Mus musculus 13 Akr1c6 23 108 98 CCDS HistoryNCBI Gene:83702Re-query CCDS DB by CCDS ID:26223.1Re-query CCDS DB by GeneID:83702See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26223.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021630.14 ENSMUSP00000021630.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021630.14Link to Ensembl Protein Viewer:ENSMUSP00000021630.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021630Re-query CCDS DB by Protein ID:ENSMUSP00000021630
Original member NCBI NM_030611.3 NP_085114.1 Updated not alive Link to Nucleotide Sequence:NM_030611.3Link to Protein Sequence:NP_085114.1Re-query CCDS DB by Nucleotide ID:NM_030611Re-query CCDS DB by Protein ID:NP_085114
Current member NCBI NM_030611.4 NP_085114.1 Accepted alive Link to Nucleotide Sequence:NM_030611.4Link to Protein Sequence:NP_085114.1Re-query CCDS DB by Nucleotide ID:NM_030611Re-query CCDS DB by Protein ID:NP_085114Link to BLAST:NP_085114.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_085114.1 323 P70694 323 100% 0 0

Chromosomal Locations for CCDS 26223.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 4434391 4434474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4436280 4436447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4438490 4438606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4446352 4446429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4447008 4447130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4448985 4449094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4449313 4449478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4454464 4454546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4457149 4457191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGATTCTAAGCAGCAGACAGTGCGTCTAAGTGATGGTCACTTCATCCCTATACTGGGGTTTGGTACCT
ATGCACCTCAAGAGGTACCTAAGAGTAAGGCTACAGAAGCTACTAAAATAGCCATAGATGCTGGTTTCCG
CCATATTGATTCTGCTTCTATGTATCAAAATGAAAAGGAAGTAGGACTAGCCATCCGAAGCAAGATAGCA
GATGGCACTGTGAAGAGGGAAGATATATTTTACACATCAAAGGTTTGGTGTACTTTTCATCGTCCAGAAC
TCGTACGGGTCTGCTTGGAACAGTCATTGAAGCAACTCCAGTTGGACTATGTGGACCTGTACCTCATTCA
TTTCCCAATGGCCATGAAGCCGGGAGAAAATTATCTCCCAAAAGATGAAAATGGAAAATTAATATATGAT
GCTGTGGATATCTGTGACACCTGGGAAGCCATGGAGAAATGCAAGGATGCAGGATTGGCCAAGTCCATTG
GGGTGTCCAACTTTAACCGCAGGCAGCTGGAGAAGATCCTGAAAAAGCCGGGGCTCAAGTACAAGCCTGT
GTGCAACCAGGTAGAATGTCATCCTTATCTCAATCAGGGAAAACTTCTGGATTTCTGCAGGTCAAAAGAC
ATTGTTCTGGTTGCTTACAGTGCTCTGGGAAGCCATCGTGAAAAACAATGGGTTGATCAGAGCTCTCCTG
TTCTTTTGGATAATCCAGTTCTTGGCTCAATGGCAAAAAAGTACAATCGAACTCCTGCGCTGATTGCCCT
TCGCTACCAGCTACAACGTGGGGTTGTGGTCCTCGCCAAGAGTTTCTCTGAGAAGAGGATAAAAGAGAAT
ATGCAGGTTTTTGAATTTCAGTTGACTTCAGAGGACATGAAAGTCCTCGATGACCTGAATAAAAATATCC
GATACATAAGTGGTTCTAGCTTTAAGGACCATCCTGATTTTCCATTTTGGGATGAATACTAA

Translation (323 aa):
MDSKQQTVRLSDGHFIPILGFGTYAPQEVPKSKATEATKIAIDAGFRHIDSASMYQNEKEVGLAIRSKIA
DGTVKREDIFYTSKVWCTFHRPELVRVCLEQSLKQLQLDYVDLYLIHFPMAMKPGENYLPKDENGKLIYD
AVDICDTWEAMEKCKDAGLAKSIGVSNFNRRQLEKILKKPGLKYKPVCNQVECHPYLNQGKLLDFCRSKD
IVLVAYSALGSHREKQWVDQSSPVLLDNPVLGSMAKKYNRTPALIALRYQLQRGVVVLAKSFSEKRIKEN
MQVFEFQLTSEDMKVLDDLNKNIRYISGSSFKDHPDFPFWDEY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH