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Report for CCDS26210.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26210.1 Public Mus musculus 12 Vipr2 23 108 98 CCDS HistoryNCBI Gene:22355Re-query CCDS DB by CCDS ID:26210.1Re-query CCDS DB by GeneID:22355See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26210.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000011315.9 ENSMUSP00000011315.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000011315.9Link to Ensembl Protein Viewer:ENSMUSP00000011315.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000011315Re-query CCDS DB by Protein ID:ENSMUSP00000011315
Original member Current member NCBI NM_009511.2 NP_033537.1 Accepted alive Link to Nucleotide Sequence:NM_009511.2Link to Protein Sequence:NP_033537.1Re-query CCDS DB by Nucleotide ID:NM_009511Re-query CCDS DB by Protein ID:NP_033537Link to BLAST:NP_033537.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033537.1 437 P41588 437 100% 0 0

Chromosomal Locations for CCDS 26210.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 116077846 116077893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116080033 116080132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116092645 116092752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116094721 116094818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116122711 116122808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116130101 116130242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116136109 116136259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116137313 116137373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116138675 116138744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116139148 116139239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116142754 116142883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116142950 116142991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116144137 116144310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGAGGGCGTCGGTGGTGCTGACCTGCTACTGCTGGTTGCTGGTGCGGGTGAGCAGCATCCATCCAGAAT
GTCGCTTTCATCTAGAAATACAAGAAGAAGAGACAAAATGTGCAGAGCTGCTAAGCAGCCAAACGGAGAA
TCAGAGAGCCTGCAGCGGTGTCTGGGACAACATCACATGCTGGCGCCCGGCAGACGTTGGGGAAACTGTC
ACAGTGCCCTGCCCCAAAGTATTCAGCAATTTCTACAGCAGACCAGGAAACATAAGCAAAAACTGCACTA
GCGATGGATGGTCAGAGACATTTCCAGATTTCATAGATGCGTGTGGCTACAACGACCCCGAGGATGAGAG
TAAGATCTCGTTTTATATTTTGGTGAAGGCCATTTATACCTTGGGCTACAGTGTTTCTCTGATGTCTCTT
ACAACAGGAAGCATAATTATCTGCCTCTTCAGGAAGCTGCACTGCACAAGGAACTACATCCACCTAAACC
TCTTCCTCTCCTTCATGCTGAGAGCCATCTCTGTGCTGGTCAAGGACAGCGTGCTCTACTCCAGCTCAGG
TCTACTGCGCTGCCACGACCAGCCAGCCTCCTGGGTTGGCTGCAAGCTCAGCCTGGTATTCTTCCAGTAC
TGTATCATGGCAAACTTCTACTGGCTTCTGGTGGAGGGTCTCTACCTGCACACCCTCCTGGTAGCCATCC
TTCCTCCCAGCAGGTGCTTCCTGGCCTACCTTCTGATCGGATGGGGCATCCCCAGTGTGTGTATAGGTGC
ATGGACAGCAACTCGCCTCTCTTTAGAAGACACAGGTTGCTGGGACACAAACGACCACAGCATCCCCTGG
TGGGTCATTCGGATGCCCATTCTAATTTCTATTGTAGTCAACTTTGCCCTCTTCATCAGCATTGTAAGGA
TCTTACTTCAGAAACTAACTTCTCCAGATGTTGGTGGCAATGACCAGTCACAGTACAAGAGGCTTGCCAA
GTCCACACTGCTGCTAATCCCCCTGTTTGGCGTCCACTACATGGTGTTTGCTGCCTTCCCTATTGGCATC
TCATCCACATACCAGATCCTGTTTGAGTTATGTGTTGGTTCCTTCCAGGGCCTGGTGGTAGCAGTTCTAT
ACTGCTTCCTGAACAGTGAGGTACAGTGTGAACTGAAAAGAAGATGGCGAGGCCTGTGCCTGACCCAAGC
TGGGAGCCGGGACTACCGGCTGCACAGCTGGTCCATGTCCCGGAATGGCTCAGAAAGTGCCCTACAGATA
CACCGTGGCTCCCGCACCCAGTCCTTCCTGCAGTCAGAGACTTCAGTCATTTAG

Translation (437 aa):
MRASVVLTCYCWLLVRVSSIHPECRFHLEIQEEETKCAELLSSQTENQRACSGVWDNITCWRPADVGETV
TVPCPKVFSNFYSRPGNISKNCTSDGWSETFPDFIDACGYNDPEDESKISFYILVKAIYTLGYSVSLMSL
TTGSIIICLFRKLHCTRNYIHLNLFLSFMLRAISVLVKDSVLYSSSGLLRCHDQPASWVGCKLSLVFFQY
CIMANFYWLLVEGLYLHTLLVAILPPSRCFLAYLLIGWGIPSVCIGAWTATRLSLEDTGCWDTNDHSIPW
WVIRMPILISIVVNFALFISIVRILLQKLTSPDVGGNDQSQYKRLAKSTLLLIPLFGVHYMVFAAFPIGI
SSTYQILFELCVGSFQGLVVAVLYCFLNSEVQCELKRRWRGLCLTQAGSRDYRLHSWSMSRNGSESALQI
HRGSRTQSFLQSETSVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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