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Report for CCDS25952.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25952.1 Public Mus musculus 12 Arf6 10 38.1 68 CCDS HistoryNCBI Gene:11845Re-query CCDS DB by CCDS ID:25952.1Re-query CCDS DB by GeneID:11845

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Sequence IDs included in CCDS 25952.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000050063 ENSMUSP00000055862 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050063Link to Ensembl Protein Viewer:ENSMUSP00000055862Re-query CCDS DB by Nucleotide ID:ENSMUST00000050063Re-query CCDS DB by Protein ID:ENSMUSP00000055862
Original member Current member NCBI NM_007481.3 NP_031507.1 Accepted alive Link to Nucleotide Sequence:NM_007481.3Link to Protein Sequence:NP_031507.1Re-query CCDS DB by Nucleotide ID:NM_007481Re-query CCDS DB by Protein ID:NP_031507Link to BLink:NP_031507.1

Chromosomal Locations for CCDS 25952.1

Assembly GRCm38 (GCF_000001635.20)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 12Link to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

Chromosome Start Stop Links
12 69372794 69373321 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternate exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (528 nt):
ATGGGGAAGGTGCTATCCAAGATCTTCGGGAACAAGGAAATGCGGATCCTCATGCTGGGCCTGGACGCAG
CCGGCAAGACAACGATCCTGTACAAGTTGAAGCTGGGCCAATCGGTGACCACCATCCCCACGGTGGGCTT
CAACGTGGAGACGGTGACTTACAAAAACGTCAAGTTCAACGTGTGGGATGTGGGCGGCCAGGACAAGATC
CGGCCGCTCTGGCGGCATTACTACACCGGGACCCAGGGTCTGATCTTCGTGGTAGACTGCGCCGACCGCG
ACCGCATCGACGAGGCCCGCCAGGAGCTGCACCGCATTATCAATGACCGGGAGATGAGGGACGCCATCAT
CCTCATCTTCGCCAACAAGCAGGACCTGCCCGATGCCATGAAACCCCATGAGATCCAGGAGAAACTGGGC
CTGACCCGGATTCGGGACAGGAACTGGTATGTGCAGCCCTCCTGTGCCACCTCCGGGGACGGACTCTATG
AGGGGCTCACATGGTTAACCTCTAACTACAAATCCTAA

Translation (175 aa):
MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI
RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG
LTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS


Links Key
 Links to:   History report
  BLink report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Map Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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