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Report for CCDS25692.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25692.1 Public Mus musculus 11 Tk1 23 108 98 CCDS HistoryNCBI Gene:21877Re-query CCDS DB by CCDS ID:25692.1Re-query CCDS DB by GeneID:21877See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 25692.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026661.3 ENSMUSP00000026661.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026661.3Link to Ensembl Protein Viewer:ENSMUSP00000026661.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000026661Re-query CCDS DB by Protein ID:ENSMUSP00000026661
Original member Current member NCBI NM_009387.2 NP_033413.2 Accepted alive Link to Nucleotide Sequence:NM_009387.2Link to Protein Sequence:NP_033413.2Re-query CCDS DB by Nucleotide ID:NM_009387Re-query CCDS DB by Protein ID:NP_033413Link to BLAST:NP_033413.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033413.2 233 P04184-1 233 100% 0 0

Chromosomal Locations for CCDS 25692.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 117815951 117816139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117816447 117816566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117817102 117817191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117822097 117822190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117824671 117824781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117825601 117825632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117825714 117825779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGAGCTACATCAATCTGCCCACCGTGCTGCCCAGCTCCCCCAGCAAGACTCGGGGGCAGATTCAGGTGA
TTCTCGGGCCCATGTTCTCAGGGAAAAGCACAGAGCTGATGAGAAGAGTCCGGCGCTTCCAGATCGCCCA
GTACAAGTGCCTGGTCATCAAGTATGCCAAAGACACGCGCTATAGCAACAGCTTCTCCACACATGATCGG
AACACCATGGACGCATTGCCAGCCTGCATGCTCCGCGATGTGACCCAGGAGTCCTTGGGTGTGGCCGTCA
TTGGCATCGATGAGGGGCAGTTTTTTCCTGACATTGTGGATTTCTGTGAAATGATGGCCAACGAGGGCAA
GACAGTAATTGTGGCAGCGCTGGATGGGACCTTCCAGAGGAAGGCTTTCGGCAGCATCTTGAACCTGGTG
CCCCTGGCGGAGAGTGTGGTGAAGCTCACCGCTGTGTGCATGGAGTGCTTCCGAGAAGCTGCCTACACGA
AGAGGCTGGGCCTGGAGAAAGAGGTGGAGGTGATTGGCGGAGCCGACAAGTATCACTCCGTGTGCCGCCT
GTGCTACTTTAAGAAGTCTTCAGCCCAGACTGCTGGCTCAGACAACAAGAACTGTCTGGTGCTGGGGCAG
CCGGGAGAGGCCTTGGTTGTCAGGAAGCTCTTTGCCTCTCAGCAAGTCCTACAATACAACTCTGCCAACT
GA

Translation (233 aa):
MSYINLPTVLPSSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSNSFSTHDR
NTMDALPACMLRDVTQESLGVAVIGIDEGQFFPDIVDFCEMMANEGKTVIVAALDGTFQRKAFGSILNLV
PLAESVVKLTAVCMECFREAAYTKRLGLEKEVEVIGGADKYHSVCRLCYFKKSSAQTAGSDNKNCLVLGQ
PGEALVVRKLFASQQVLQYNSAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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