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Report for CCDS25261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25261.1 Public Mus musculus 11 Lrrc59 23 108 98 CCDS HistoryNCBI Gene:98238Re-query CCDS DB by CCDS ID:25261.1Re-query CCDS DB by GeneID:98238See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25261.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021239.6 ENSMUSP00000021239.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021239.6Link to Ensembl Protein Viewer:ENSMUSP00000021239.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021239Re-query CCDS DB by Protein ID:ENSMUSP00000021239
Original member Current member NCBI NM_133807.2 NP_598568.1 Accepted alive Link to Nucleotide Sequence:NM_133807.2Link to Protein Sequence:NP_598568.1Re-query CCDS DB by Nucleotide ID:NM_133807Re-query CCDS DB by Protein ID:NP_598568Link to BLAST:NP_598568.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598568.1 307 Q922Q8 307 100% 0 0

Chromosomal Locations for CCDS 25261.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 94630005 94630109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94632081 94632140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94634545 94634703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94634912 94635016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94638531 94638603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94641220 94641393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94643294 94643541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGACCAAGGCCGGTAGCAAGGGCGGGAACCTCCGCGACAAGCTGGACGGCAATGAGCTGGACCTGAGCC
TCAGCGACCTGAATGAAGTCCCCGTCAAGGAGCTGGCTGCACTTCCCAAGGCTACGGTATTGGATCTGTC
CTGCAATAAACTGAGTACTCTTCCGTCGGATTTCTGTGGCCTCACACACCTGGTAAAGCTGGACCTCAGC
AAGAACAAGCTGCAGCAGCTACCCGCAGACTTTGGCCGCCTGGTTAACCTTCAGCATTTGGATCTCCTCA
ACAACAGGCTGGTCACCCTGCCTGTCAGCTTTGCCCAGCTCAAGAATCTGAAGTGGCTGGATCTGAAGGA
CAATCCCCTGGACCCTGTCCTGGCCAAGGTGGCAGGTGATTGCTTGGATGAGAAGCAATGTAAGCAGTGT
GCAAACAAGGTGTTACAGCACATGAAGGCCGTGCAGGCAGATCAGGAACGAGAGCGGCAGCGCCGGCTGG
AAGTGGAGCGAGAGGCAGAGAAGAAGCGTGAGGCCAAGCAGCAAGCTAAGGAAGCGAAGGAGCGCGAGCT
GCGGAAGCGGGAGAAGGCGGAGGAGAAGGAGCGCCGGCGGAAGGAGTATGACGCTCAGAAGGCGTCCAAG
CGGGAGCAAGAGAAGAAGCCTAAGAAAGAGGCAAACCAGGCCCCGAAATCGAAGTCTGGCTCTCGTCCTC
GCAAGCCACCACCCCGAAAACACACTCGCTCCTGGGCTGTGCTGAAGGTGTTGCTGTTGCTCCTGCTGCT
GTGTGTAGCAGGAGGGCTGGTTGTATGCCGGGTGACAGGGCTGCACCAGCAGCCCCTCTGCACCAGCGTG
AACACCATCTACGACAATGCGGTCCAGGGCCTGCGTCATCATGAGATCCTCCAGTGGGTCCTGCAAACCG
ACTCCCAGCAGTGA

Translation (307 aa):
MTKAGSKGGNLRDKLDGNELDLSLSDLNEVPVKELAALPKATVLDLSCNKLSTLPSDFCGLTHLVKLDLS
KNKLQQLPADFGRLVNLQHLDLLNNRLVTLPVSFAQLKNLKWLDLKDNPLDPVLAKVAGDCLDEKQCKQC
ANKVLQHMKAVQADQERERQRRLEVEREAEKKREAKQQAKEAKERELRKREKAEEKERRRKEYDAQKASK
REQEKKPKKEANQAPKSKSGSRPRKPPPRKHTRSWAVLKVLLLLLLLCVAGGLVVCRVTGLHQQPLCTSV
NTIYDNAVQGLRHHEILQWVLQTDSQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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