CCDS Report for Consensus CDS

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Report for CCDS23888.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
23888.1	Public	Mus musculus	10	Hkdc1	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23888.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000020277.8	ENSMUSP00000020277.8	Accepted	alive
		NCBI	NM_145419.1	NP_663394.1	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_663394.1	915	Q91W97	915	100%	0	0

Chromosomal Locations for CCDS 23888.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)

Genome Browser links:

Chromosome	Start	Stop
10	62383775	62383922
10	62385678	62385911
10	62391311	62391466
10	62393687	62393870
10	62395155	62395254
10	62395398	62395493
10	62398585	62398704
10	62398790	62398929
10	62400192	62400496
10	62401724	62401957
10	62403492	62403647
10	62405425	62405608
10	62408615	62408714
10	62409790	62409885
10	62411507	62411626
10	62411706	62411854
10	62417775	62417937
10	62422298	62422360

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2748 nt):
ATGTTTGCAGTACACTTGGTGGCGTTTTACTTCACCAAGCTGAAGGAGGACCAGATCAAGAAGGTGGACA GGTTCCTGTATCACATGCGGCTCTCGGATGAGACCCTGGTGGACATCATGGCCCGCTTCCAGGCCGAGAT GGAGAAAGGCTTGGGGAAGGACACCAACCCCACTGCCTCTGTGAAGATGCTGCCCACATTCGTCAGGGCC ATTCCAGATGGCTCAGAAAACGGGGAATTCCTTTCCCTGGATCTCGGAGGATCCAAGTTTCGGGTCTTGA AGGTGCAAGTCTCCCAAGAGGGCCAGCAAAATGTTCAGATGGAGAGCCAGTTCTACCCAATGCCCAATGA AATCACCCGTGGGAATGGCACGGAGCTTTTTGACTACGTAGCCGACTGCCTGGCAGATTTCATGAAGACC AAAAATCTGACACATAAGAAGCTGCCTCTGGGCTTCACCTTTTCTTTTCCCTGCAGACAGAATAAGTTGG AGGAGGGTGTTCTGCTTTCGTGGACCAAGAAGTTCAAGGCCCGGGGAGTTCAGGACACAGACGTGGTGAA CCGCCTGGCCACTGCCATGAAGAAGCACAAGGACCTGGACGTGGACATCCTGGCTTTGGTTAACGACACT GTGGGGACCATGATGACTTGTGCTTATGATGATCCCAACTGTGAAGTCGGCGTTATCATCGGAACAGGCA CCAACGCGTGTTACATGGAGGACATGAGCAACATCGACCTCGTGGAAGGGGACGAGGGAAGGATGTGTAT CAACACGGAGTGGGGGGCCTTTGGGGACGATGGGGCTTTGGAGGACATCCGCACCGAGTTTGACAGAGAG CTGGACCTGGGCTCGCTCAACCCCGGGAAGCAGCTGTTCGAGAAGATGATCAGCGGGCTGTACATGGGGG AGCTGGTCAGGCTTATCTTGCTGAAGATGGCCAAAGTTGGTCTCCTGTTTGGGGGTGCAAAATCCTCTGC TCTCCATACAAAGGGCAAGATCGAAACACAGCACGTGGCTGCCATGGAGATGAGTAAAGAAGGCCTGGCC AACACTCGAGAGATCCTGGTGGATTTGGGCCTGGAGCCCTCTGAGTCAGACTGCATCGCTGTCCAGCACG TGTGCACCATCGTCTCTTTTCGCTCAGCCAATCTCTGCGCAGCGGCTCTGGCAACCATCCTGACTCGACT CCGAGAGAACAAGAAGCTGGCCCGGCTCCGCACCACAGTGGGCATGGATGGAACTCTCTACAAAACACAC CCTCAGTACCCCAAACGCCTACACAAGGTGGTGAGGAGACTGGTCCCAAACTGTGATGTCCGCTTCCTCC TGTCAGAGAGTGGAAGCACCAAGGGGGCCGCCATGGTGACCGCAGTGGCCTCTCGGGTACAGGCCCAGCG CAAGCAGATCGACAAGGTGCTGGCTTTGTTCCAGTTGACCCGAGAGCAACTCCTGGGTGTGCGGGACAAG ATGCGGGCTGAACTAGAGTACGGGCTGAAGAAAAAGACCCACTCTCTGGCTACCGTGAAGATGCTTCCCA CCTATGTCTATGGGATGCCGGATGGCACAGAGAAAGGAAAGTTCCTTGCCCTGGATTTGGGGGGAACCAA CTTCCGAGTCCTCCTGGTAAAGATCAGGCGGAGGTCTGTGCGCATGTACAACAAGATCTTCGCCATCCCT CTGGAGATCATGCAGGGCACTGGGGAGGAGCTCTTTGACCACATCGTACAGTGCATCGCTGACTTCCTGG ACTACATGGGCCTCAAGGGCGCCCAGCTGCCTTTGGGCTTCACCTTCTCCTTCCCCTGCAGACAGACATG CATCGACAAGGGGACTCTAGTAGGGTGGACCAAAGGCTTCAAGGCCACCGACTGTGAAGGGGAGGACGTG GTGGACATGCTCAGAGAAGCCATCAAGAGGAGAAACGAGTTTGACCTGGACATTGTTGCAATCGTGAACG ACACAGTGGGGACCATGATGACCTGTGGCTATGAAGATCCCAGGTGTGAGATTGGCTTGATTGCAGGGAC AGGAAGCAACGTGTGCTACATGGAGGAAATGAGGAACATCGAGCTGGTGGATGGGGACGAAGGCCGGATG TGCGTCAACACGGAGTGGGGCGGGTTTGGTGACAATGGCTGCATCGATGACATCCGCACCCAGTATGACA AGGAGGTGGATGAGGGCTCCCTGAACGCCGGCAAGCAGAGATACGAGAAAATGACCAGTGGAATGTACCT GGGGGAGATTGTGAGGCGGATCCTGATCGACCTCACCCGGCAGGGGCTCCTCTTCCGAGGGCAGATTTCA GAGCGACTCCGGACCAGGGGCATCTTTGAAACCAAATTCCTGTCCCAGATTGAAAGTGACCGGCTGGCCC TCCTGCAGGTCAGGAGGATCCTGCAGCAGCTGGGCCTGGACAGCACGTGCGAAGACAGTATTGTGGTGAA GGAGGTGTGTGGGGCTGTGTCTCGGAGGGCCGCCCAGATGTGTGGTGCCGGCATGGCTGCCATCGTGGAG AAGAGGAGAGAAGACCAAGGCCTCCAGCACTTCAAGGTCACCGTGGGCGTGGATGGCACACTGTACAAGC TGCACCCGCACTTCTCCCGGATACTGCAGGAGACGGTGAAAGAGCTGGCCCCTCAGTGTGATGTGACATT TATGTTGTCAGAAGACGGCAGCGGGAAGGGAGCAGCTCTGATCACAGCTGTAGCCAAGAGGTTACAGCAG CCACGGAAGGACATCTAG
Translation (915 aa):
MFAVHLVAFYFTKLKEDQIKKVDRFLYHMRLSDETLVDIMARFQAEMEKGLGKDTNPTASVKMLPTFVRA IPDGSENGEFLSLDLGGSKFRVLKVQVSQEGQQNVQMESQFYPMPNEITRGNGTELFDYVADCLADFMKT KNLTHKKLPLGFTFSFPCRQNKLEEGVLLSWTKKFKARGVQDTDVVNRLATAMKKHKDLDVDILALVNDT VGTMMTCAYDDPNCEVGVIIGTGTNACYMEDMSNIDLVEGDEGRMCINTEWGAFGDDGALEDIRTEFDRE LDLGSLNPGKQLFEKMISGLYMGELVRLILLKMAKVGLLFGGAKSSALHTKGKIETQHVAAMEMSKEGLA NTREILVDLGLEPSESDCIAVQHVCTIVSFRSANLCAAALATILTRLRENKKLARLRTTVGMDGTLYKTH PQYPKRLHKVVRRLVPNCDVRFLLSESGSTKGAAMVTAVASRVQAQRKQIDKVLALFQLTREQLLGVRDK MRAELEYGLKKKTHSLATVKMLPTYVYGMPDGTEKGKFLALDLGGTNFRVLLVKIRRRSVRMYNKIFAIP LEIMQGTGEELFDHIVQCIADFLDYMGLKGAQLPLGFTFSFPCRQTCIDKGTLVGWTKGFKATDCEGEDV VDMLREAIKRRNEFDLDIVAIVNDTVGTMMTCGYEDPRCEIGLIAGTGSNVCYMEEMRNIELVDGDEGRM CVNTEWGGFGDNGCIDDIRTQYDKEVDEGSLNAGKQRYEKMTSGMYLGEIVRRILIDLTRQGLLFRGQIS ERLRTRGIFETKFLSQIESDRLALLQVRRILQQLGLDSTCEDSIVVKEVCGAVSRRAAQMCGAGMAAIVE KRREDQGLQHFKVTVGVDGTLYKLHPHFSRILQETVKELAPQCDVTFMLSEDGSGKGAALITAVAKRLQQ PRKDI

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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