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Report for CCDS23884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23884.1 Public Mus musculus 10 Aifm2 23 108 98 CCDS HistoryNCBI Gene:71361Re-query CCDS DB by CCDS ID:23884.1Re-query CCDS DB by GeneID:71361See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23884.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067857.10 ENSMUSP00000070054.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067857.10Link to Ensembl Protein Viewer:ENSMUSP00000070054.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000067857Re-query CCDS DB by Protein ID:ENSMUSP00000070054
Original member Current member EBI ENSMUST00000099706.8 ENSMUSP00000097297.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099706.8Link to Ensembl Protein Viewer:ENSMUSP00000097297.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099706Re-query CCDS DB by Protein ID:ENSMUSP00000097297
Original member Current member EBI ENSMUST00000105455.8 ENSMUSP00000101095.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105455.8Link to Ensembl Protein Viewer:ENSMUSP00000101095.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105455Re-query CCDS DB by Protein ID:ENSMUSP00000101095
Original member Current member NCBI NM_001039194.3 NP_001034283.1 Accepted alive Link to Nucleotide Sequence:NM_001039194.3Link to Protein Sequence:NP_001034283.1Re-query CCDS DB by Nucleotide ID:NM_001039194Re-query CCDS DB by Protein ID:NP_001034283Link to BLAST:NP_001034283.1
Original member Current member NCBI NM_001284300.1 NP_001271229.1 Accepted alive Link to Nucleotide Sequence:NM_001284300.1Link to Protein Sequence:NP_001271229.1Re-query CCDS DB by Nucleotide ID:NM_001284300Re-query CCDS DB by Protein ID:NP_001271229Link to BLAST:NP_001271229.1
Original member Current member NCBI NM_178058.4 NP_835159.1 Accepted alive Link to Nucleotide Sequence:NM_178058.4Link to Protein Sequence:NP_835159.1Re-query CCDS DB by Nucleotide ID:NM_178058Re-query CCDS DB by Protein ID:NP_835159Link to BLAST:NP_835159.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034283.1 373 Q8BUE4-1 373 100% 0 0
NP_001271229.1 373 Q8BUE4-1 373 100% 0 0
NP_835159.1 373 Q8BUE4-1 373 100% 0 0

Chromosomal Locations for CCDS 23884.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 61725877 61726054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61726365 61726480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61727647 61727766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61728129 61728221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61732323 61732431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61734277 61734429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61735458 61735658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61736583 61736734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGGGGTCCCAGGTCTCGGTGGATACAGGAGCCGTGCACGTGGTGATCGTGGGCGGGGGCTTCGGAGGGA
TAGCGGCTGCCAGCCAGCTGCAGGCGCTGAATGTCCCCTTCATGCTGGTGGATATGAAGGACTCCTTCCA
CCACAATGTGGCAGCCCTCCGGGCCTCCGTGGAGAGCGGGTTCGCCAAAAAGACATTCATTTCGTACTCT
GCGACCTTCAAGGACAACTTCCGCCAGGGCAAAGTGATTGGCATAGACTTGAAGAACCGGATGGTGTTGC
TACAGGGTGGCGAGGCCTTGCCCTTCTCACATCTTATCCTGGCCACAGGCAGCACCGGACCCTTCCCTGG
CAAGTTTAACGAGGTGTCCTGCCAGCAGGCAGCCATCCAGGCCTATGAGGACATGGTGAAGCAGATCCAG
CGCTCACAATTCATCGTGGTGGTGGGAGGCGGCTCTGCAGGAGTAGAGATGGCAGCAGAGATTAAAACCG
AGTACCCTGAGAAGGAGGTCACTCTTATCCACTCCAGAGTACCCCTGGCCGACAAGGAACTCCTGCCCTG
TGTGCGGCAGGAAGTGAAGGAGATCCTCCTCCGGAAGGGTGTGCAGCTGCTGCTGAGTGAGCGGGTGAGC
AACCTGGAGGAACTGCCTCGCAATGAGTATCGGGAGTACATCAAGGTGGAGACAGACAAGGGCACGGAGG
TGGCCACCAACATGGTGATTGTGTGCAATGGGATCAAGATCAACAGCTCTGCCTACCGCAGTGCATTTGA
GAGTAGGCTGGCTAGCAATGGTGCTCTGAAAGTGAACGAGTTCCTCCAGGTGGAAGGTTACAGCAATATT
TATGCCATTGGTGACTGTGCCGATACCAAGGAGCCCAAGATGGCCTACCACGCTGGCCTGCATGCCAATG
TTGCCGTGGCCAACATCGTCAACTCCATGAAGCAGAGGCCACTCAAAGCTTACAAGCCAGGTGCGCTGAC
ATTCCTCCTGTCCATGGGCAGAAATGATGGCGTGGGTCAGATCAGTGGCTTCTACGTAGGCCGCCTCATG
GTGCGGCTGGCCAAGAGCAGGGACCTTCTCATCTCCACAAGCTGGAAAACCATGCGGCAGTCTCCACCGT
GA

Translation (373 aa):
MGSQVSVDTGAVHVVIVGGGFGGIAAASQLQALNVPFMLVDMKDSFHHNVAALRASVESGFAKKTFISYS
ATFKDNFRQGKVIGIDLKNRMVLLQGGEALPFSHLILATGSTGPFPGKFNEVSCQQAAIQAYEDMVKQIQ
RSQFIVVVGGGSAGVEMAAEIKTEYPEKEVTLIHSRVPLADKELLPCVRQEVKEILLRKGVQLLLSERVS
NLEELPRNEYREYIKVETDKGTEVATNMVIVCNGIKINSSAYRSAFESRLASNGALKVNEFLQVEGYSNI
YAIGDCADTKEPKMAYHAGLHANVAVANIVNSMKQRPLKAYKPGALTFLLSMGRNDGVGQISGFYVGRLM
VRLAKSRDLLISTSWKTMRQSPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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