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Report for CCDS23708.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23708.1 Public Mus musculus 10 Cited2 16 104 75 CCDS HistoryNCBI Gene:17684Re-query CCDS DB by CCDS ID:23708.1Re-query CCDS DB by GeneID:17684See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Sequence IDs included in CCDS 23708.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000038107 ENSMUSP00000038405 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038107Link to Ensembl Protein Viewer:ENSMUSP00000038405Re-query CCDS DB by Nucleotide ID:ENSMUST00000038107Re-query CCDS DB by Protein ID:ENSMUSP00000038405
Original member Current member NCBI NM_010828.3 NP_034958.2 Accepted alive Link to Nucleotide Sequence:NM_010828.3Link to Protein Sequence:NP_034958.2Re-query CCDS DB by Nucleotide ID:NM_010828Re-query CCDS DB by Protein ID:NP_034958Link to BLink:NP_034958.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034958.2 269 O35740-1 269 100% 0 0

Chromosomal Locations for CCDS 23708.1

Assembly GRCm38.p2 (GCF_000001635.22)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 10Link to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 17723946 17724755 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGGCAGACCATATGATGGCCATGAACCACGGGCGCTTCCCCGACGGCACCAACGGGCTGCACCACCACC
CT
GCCCACCGCATGGGCATGGGGCAGTTCCCGAGCCCGCATCATCACCAGCAGCAGCAGCCCCAGCACGC
C
TTCAACGCCCTCATGGGCGAGCACATACACTACGGCGCGGGCAACATGAATGCCACGAGCGGCATCAGG
CAC
GCCATGGGGCCGGGGACTGTGAACGGGGGGCACCCCCCGAGCGCTCTGGCCCCGGCCGCCAGGTTTA
AC
AACTCCCAGTTCATGGGTCCCCCGGTGGCCAGCCAGGGAGGCTCCCTGCCGGCCAGCATGCAGCTGCA
G
AAGCTCAACAACCAGTATTTCAACCATCACCCCTACCCCCACAACCACTACATGCCGGATTTGCACCCC
ACT
GCAGGCCACCAGATGAACGGGACAAACCAGCACTTCCGAGATTGCAACCCCAAGCACAGCGGAGGCA
GC
AGCACCCCTGGCGGTGCGGGTGGCAGCGGCACCCCCGGCGGCTCCGGCGGCACCTCGGGCGGCGCGGG
T
GGCAGCAGCGCGGGCGGCAGCGGCGGTGGCAGCACCATGCCCGCCTCGGTGGCTCACGTCCCCGCGGCA
ATG
CTGCCGCCCAATGTCATAGACACTGATTTCATCGACGAGGAAGTGCTTATGTCCTTAGTGATAGAAA
TG
GGTTTGGACCGCATCAAGGAGCTGCCCGAACTCTGGCTGGGCCAAAATGAGTTTGATTTTATGACGGA
C
TTCGTGTGCAAGCAGCAGCCCAGCAGAGTCAGCTGTTGA


Translation (269 aa):
MADHMMAMNHGRFPDGTNGLHHHPAHRMGMGQFPSPHHHQQQQPQHAFNALMGEHIHYGAGNMNATSGIR
H
AMGPGTVNGGHPPSALAPAARFNNSQFMGPPVASQGGSLPASMQLQKLNNQYFNHHPYPHNHYMPDLHP
T
AGHQMNGTNQHFRDCNPKHSGGSSTPGGAGGSGTPGGSGGTSGGAGGSSAGGSGGGSTMPASVAHVPAA
M
LPPNVIDTDFIDEEVLMSLVIEMGLDRIKELPELWLGQNEFDFMTDFVCKQQPSRVSC




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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