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Report for CCDS23084.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23084.1 Public Mus musculus 9 Bsx 23 108 98 CCDS HistoryNCBI Gene:244813Re-query CCDS DB by CCDS ID:23084.1Re-query CCDS DB by GeneID:244813See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23084.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067375.4 ENSMUSP00000068057.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067375.4Link to Ensembl Protein Viewer:ENSMUSP00000068057.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000067375Re-query CCDS DB by Protein ID:ENSMUSP00000068057
Original member Current member NCBI NM_178245.3 NP_839976.1 Accepted alive Link to Nucleotide Sequence:NM_178245.3Link to Protein Sequence:NP_839976.1Re-query CCDS DB by Nucleotide ID:NM_178245Re-query CCDS DB by Protein ID:NP_839976Link to BLAST:NP_839976.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_839976.1 232 Q810B3-1 232 100% 0 0

Chromosomal Locations for CCDS 23084.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 40874178 40874439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 40876294 40876490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 40877608 40877847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGAATCTCAACTTCACTTCCCCTCTTCATCCAGCATCTTCTCAGAGGCCCACGTCGTTTTTCATCGAGG
ACATTCTGCTACACAAGCCCAAGCCGTTGAGGGAAGTGGCCCCTGACCACTTTGCCAGCTCTCTGGCCTC
TAGGGTGCCTTTGCTAGACTATGGCTACCCCCTTATGCCCACACCCACCCTCCTCACCCCTCACGCTCAT
CATCCTCTGCATAAGGGAGATCACCACCATCCTTATTTCCTGACCACCTCAGGGATGCCGGTCCCGGCGC
TGTTCCCGCACCCGCAGCACGCGGAGTTGCCCGGGAAGCACTGCCGCCGCCGCAAAGCTCGCACGGTGTT
TTCTGACTCGCAGCTCTCCGGCCTGGAGAAAAGGTTCGAAATCCAGCGCTACCTGTCGACGCCAGAGCGT
GTGGAGCTGGCCACTGCCCTCAGCCTCTCAGAGACTCAGGTGAAAACGTGGTTCCAGAACCGGCGGATGA
AGCATAAAAAGCAGCTGAGGAAAAGCCAAGACGAACCGAAAGCGGCAGACGGGCCGGAGAGCCCCGAAGG
CAGCCCTCGTGCTCCCGAGGGCGCGCCCGCCGACGCTCGGCTGAGCCTGCCCGCCGGTGCCTTCGTGCTT
ACTGAGCCCGAGGACGAAGTGGACATTGGGGATGAAGGCGAGCTCAGCTCAGGGCCGCATGTGCTCTGA

Translation (232 aa):
MNLNFTSPLHPASSQRPTSFFIEDILLHKPKPLREVAPDHFASSLASRVPLLDYGYPLMPTPTLLTPHAH
HPLHKGDHHHPYFLTTSGMPVPALFPHPQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPER
VELATALSLSETQVKTWFQNRRMKHKKQLRKSQDEPKAADGPESPEGSPRAPEGAPADARLSLPAGAFVL
TEPEDEVDIGDEGELSSGPHVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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