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Report for CCDS23082.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23082.1 Public Mus musculus 9 Clmp 23 108 98 CCDS HistoryNCBI Gene:71566Re-query CCDS DB by CCDS ID:23082.1Re-query CCDS DB by GeneID:71566See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23082.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034522.7 ENSMUSP00000034522.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034522.7Link to Ensembl Protein Viewer:ENSMUSP00000034522.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034522Re-query CCDS DB by Protein ID:ENSMUSP00000034522
Original member Current member NCBI NM_133733.5 NP_598494.2 Accepted alive Link to Nucleotide Sequence:NM_133733.5Link to Protein Sequence:NP_598494.2Re-query CCDS DB by Nucleotide ID:NM_133733Re-query CCDS DB by Protein ID:NP_598494Link to BLAST:NP_598494.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598494.2 373 Q8R373 373 100% 0 0

Chromosomal Locations for CCDS 23082.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 40686335 40686359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 40760901 40761058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 40771105 40771306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 40772361 40772528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 40774363 40774485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 40781113 40781254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 40782307 40782610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGTCCCTCTTCTTCCTCTGGCTAGTATCCTATTATGTTGGAACGCTGGGAACTCACACTGAGATCAAGA
GAGTGGCAGAGGAAAAGGTTACCTTGCCCTGTCACCATCAACTGGGGCTTCCCGAGAAAGACACCCTGGA
CATTGAATGGCTGCTCACCGATAATGAAGGGAACCAAAAAGTGGTTATTACGTATTCCAGCCGTCATGTC
TACAATAACTTGACCGAGGAGCAGAAGGGCCGAGTGGCCTTCGCTTCCAACTTCCTGGCAGGAGATGCTT
CCCTGCAGATTGAGCCTCTGAAACCCAGTGATGAAGGCAGATACACCTGCAAGGTGAAGAATTCAGGACG
CTATGTCTGGAGCCATGTCATCTTGAAAGTGCTAGTGAGACCATCCAAGCCCAAGTGTGAGCTGGAAGGA
GAGCCGACCGAAGGAAGTGACCTGACGCTGCAGTGTGAGTCTGCCTCTGGAACTAAGCCCATTGTGTATT
ATTGGCAGCGAATCCGGGAGAAGGAGGGAGAAGATGAACACCTGCCACCCAAATCCAGAATTGATTACAA
CAACCCTGGCCGAGTGCTGCTGCAGAATCTCACCATGGCCTCCTCTGGGCTTTACCAGTGCACAGCAGGC
AACGAGGCTGGAAAGGAGAGCTGTGTGGTACGGGTGACTGTACAGTATGTGCAGAGCATTGGCATGGTGG
CAGGAGCAGTGACAGGCATAGTGGCAGGAGCCCTGCTCATTTTCCTCCTGATATGGCTGCTAATACGAAG
GAAAAGCAAAGACAGATACGAGGAAGAAGACAGACCTAATGAAATCCGAGAAGACGCCGAAGCGCCCCGA
GCCCGCCTTGTGAAGCCTAGCTCCTCTTCCTCAGGCTCCCGGAGCTCACGCTCTGGCTCCTCCTCCACCC
GCTCCACCGGGAACAGTGCCTCCAGAAGCCAGCGGACGCTGTCGAGTGAAGCAGCGCCGCAGCAGCCCGG
GCTAGCCCCGCAGGCATACAGCCTCATAGGACCGGAAGTGAGAGGTTCTGAACCAAAGAAAGTCCACCAT
ACGACCCTGACCAAAGCAGAAACCACACTCAGCACAACGCCCAGCCAGAGCAAAGCCTTCCAAACTGTCT
GA

Translation (373 aa):
MSLFFLWLVSYYVGTLGTHTEIKRVAEEKVTLPCHHQLGLPEKDTLDIEWLLTDNEGNQKVVITYSSRHV
YNNLTEEQKGRVAFASNFLAGDASLQIEPLKPSDEGRYTCKVKNSGRYVWSHVILKVLVRPSKPKCELEG
EPTEGSDLTLQCESASGTKPIVYYWQRIREKEGEDEHLPPKSRIDYNNPGRVLLQNLTMASSGLYQCTAG
NEAGKESCVVRVTVQYVQSIGMVAGAVTGIVAGALLIFLLIWLLIRRKSKDRYEEEDRPNEIREDAEAPR
ARLVKPSSSSSGSRSSRSGSSSTRSTGNSASRSQRTLSSEAAPQQPGLAPQAYSLIGPEVRGSEPKKVHH
TTLTKAETTLSTTPSQSKAFQTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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