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Report for CCDS22060.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22060.1 Public Mus musculus 8 Arhgef18 23 108 98 CCDS HistoryNCBI Gene:102098Re-query CCDS DB by CCDS ID:22060.1Re-query CCDS DB by GeneID:102098See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22060.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004684.12 ENSMUSP00000004684.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004684.12Link to Ensembl Protein Viewer:ENSMUSP00000004684.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000004684Re-query CCDS DB by Protein ID:ENSMUSP00000004684
Original member Current member NCBI NM_133962.4 NP_598723.3 Accepted alive Link to Nucleotide Sequence:NM_133962.4Link to Protein Sequence:NP_598723.3Re-query CCDS DB by Nucleotide ID:NM_133962Re-query CCDS DB by Protein ID:NP_598723Link to BLAST:NP_598723.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598723.3 1021 Q6P9R4-1 1021 100% 0 0

Chromosomal Locations for CCDS 22060.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 3427423 3427490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3429232 3429344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3429499 3429639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3432619 3432869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3434872 3434997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3436982 3437099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3439487 3439738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3441220 3441296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3444889 3445067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3447002 3447090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3448383 3448568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3450296 3450436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3450781 3450914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3451491 3451538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3451631 3451678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3451815 3452285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3453038 3453371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3454159 3454284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3454372 3454535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3066 nt):
ATGACCATCTCTCAGAAAGGGGGTCTCCAGCCAACACCGAGCCCAGCTGGATCTGGGGTGCGACTTGGAC
CAATTGCTGGAGACATGGATGAAGCTGACTCCGTGTTTTTAAAGTTGAAGCAGACGGCAGACGACTCTCT
GTCACTCACATCCTCGAATGCTGAGTCTGTTTTCATAGAAGACCCTTACATTGCTTCACTGAGGTGTGAG
ATCGAATCAGATGCACATGAGTTTGAGGCCGAGTCCTGGAGCCTCTCTGTGGATTTAGCATATGCCAAGA
AACAGAAGAAGGAGGTGGTAAAGAGACAGGACGTCCTATATGAGCTGATGCAGACAGAGGCTCATCACGT
GCGCACACTAAAGATCATGCTGAAAGTATACTCCAGAGCCCTGCAGGAAGAGCTGCAATTCAGTGGCCAG
GCAGTCAGCCGTCTGTTTCCGTGCGCTGATGACTTACTGGACATGCACAGCCATTTCCTTGCCCGCCTTA
AGGAGCGCCGGCAGGAGTTCCTAGAGGAGGGCAGTGATCGGAATTACGTCATCCAAAAGATCGGAGACGT
CCTGGTTCAGCAGTTCTCAGGAGAAACCGGGGAGAGAATGAAGGAGAAATACGCTGTGTTCTGTAGTGGC
CACAATGATGCAGTCGGTCAGTACAAGCTATTGCTGCAGCAAAGCAAGAAGTTTCAAAACTTAATCAAGA
AAATTGGCAACTTTTCCATTGTGCGAAGGCTGGGAGTGCAGGAGTGCATCCTTCTGGTCACACAGCGCAT
AACCAAGTACCCGGTGCTTGTGGAACGCATCATCCAGAACACAGAAGCTGGCACTGAGGACTACAAGGAC
CTGAGCCAAGCCCTGAGCCTCATCAAAGACATCATCTCACAAGTGGACGCCAAAGTCAGTGAGTATGAGA
AGGACCAGCGCCTCAAGGAGATTGCAGCCAAGACGGACCAGAAGTCGTCTGGCAAACTCAAAAACGGGCT
AACCTTCCGAAAGGAGGACATGCTGCAGCAGCGCCAGCTCCACCTGGAAGGCGCCCTCTGCTGGAAGTCC
ACCTCAGGGCGCCTGAAAGATGTCCTCGCTGTCCTGCTGACCGATGTGCTTTTGCTGCTGCAAGAAAAAG
ATCAGAAATATGTCTTTGCTTCTGTGGACTCAAAGCCACCCGTCATCTCTCTGCAAAAGCTCATCGTGAG
AGAGGTAGCCAACGAGGAGAAGGCCATGTTCCTGATCAGCGCCTCCATGCAGGGGCCAGAGATGTATGAG
ATGTACACCAGCTCCAAAGAGGACAGGAACATCTGGATGGCCCACATCCGCCGGGCCGTGGAGAGCTGTC
CTGACGAGGAGGAGGACGTTTTCAGTGAGGCTGAGGAGAAAAAGATAGCTGAAGCCCGCACCATGAAACT
CCAGGAATTTCAAGAGCGACTGAGCCTGAAAGACCAGCTGATTGCCCAGAGCCTTCTGGAGAAACAGCAG
ATCTACCTGGAGATGGCTCAGCTGAGTGGGCTGGAAGAGTCAGCCCAGAACCGAGGCCTCTTCCGAGGAG
GAGGAGACCCCTCTGAGACCCTGCGGGGGGAGCAGATTCTCAGATCGGCCATGAGTGAGATTGAGGGCAT
CCAGAGCCTGATCTGCCAGCGGCACCTGGGCAGCACCAGTAGCCAAGTGGAGGAGGGAAGTGTCTCTGCA
GGCCTGCCTCGGCGGGCTGAGACCTTCGGGGGCTATGACAGTGTGGGAAGCCCTAGCAAGGGTGGCAGCT
TTAAAAGGAAGGTATCCAACAGTGACCTCAGGCCCCAAGACTGGCAGGGACCTGCTAGCAGCCCAGACTC
CAGGCCCTGTGACAACAGCGCCCCCAGTGGCTGCTGTGAGGAATCGCCACAGGCTGTGGAGATGCCTAGC
ACAGAGAGCCTGCCCACTGTCCTGGAATTAGAGCTGGTCCACCGGGTCCAGACACTGTCGCAGTTGCTTC
TTAGTCTCCAGGCGGTCATCGCTCAACAGGATAGCTATGTGGAGATGCAAAGAACGGCCATCCAGGAGCG
CGAGAAGCAGTTCCGGCTGCAGTCAACACGTGGGAACCTGCTGCTGGAGCAAGAGCGGCAACGCAACTTT
GAGAAGCAGCGTGAGGAGCGCGCCGGTGTGGAGAAGCTGCAAAGCCAACTTCGCCAGGAGCAGCAGCGAT
GGGAGCGGGAGCGGGCACGCCAGCAGCAGGAACTGGAGCTGGCCGGTGCGCGACTGCAGGAGCGAGAGGG
CGAGGCACGCCAGATGCGCCAGCGGCTGGACCAGGAGCGCACCGAGCTAGAGCGACAGCGCCAGGCCTAC
CAGCATGACCTGGAGCGTCTGCGTGAGGCCCAGCGAGCAGTGGACCGTGAACGTGAGCGCCTGGAGCTGC
TGCGCAGGTTCAAGAAACAGAACACTGTACCAGGGGCACTGCCCCCGGAGGTGCTGGCAGAGGCCCAACC
TGCAAGCCACCCTCCCAGCTTCAATGGCGATGGGCTGGAGGGGCACTCGGCCCCAGCCAAAGCACCAGGA
ACCCAAGGGAGCGCGATGCTACATGGCACAGGACCTGACAACGTAGAGCGACCCGAGGTGGCCCGCTGGG
ACAGTGCCCCCCCTGAGAGCCGGCCAGCCAAGAGCGATGTGCCCATCCAGCTACTCAGTGCCACCAATCA
GATTCAGAGGCAGACAGCCGTGCAACAGCAGATCCCCACCAAGCTGGCCGCCTCCACCAAGGGTGGCAAG
GAGAAGGGCAGCAAGAGCAGGGGTTCCCAGCGTTGGGAGAGCTCAGCGTCCTTCGACCTGAAGCAGCAGC
TGCTCCTCAGCAAGTTCATAGGCAAGGATGAGAGTGCATCACGGAACCGCCGTTCACTGAGTCCCGTCCT
GCCTGCCGCCCATGGGTCTGCACCTGCCTCAGACCCCTGCTTCCCAGCCCCAAGCCCGGCCCCAGCTGCC
ACACCCCCCGAGGCCTTCAAGTTCGGAGGCACATCACTACCACCTGTCTCCCCAGCTTCCTCGCTGCCAA
CCACACCACTCGCCACCACAGATGAAGTTAGTAAGGAAGATGTCATCTTCTTCTGA

Translation (1021 aa):
MTISQKGGLQPTPSPAGSGVRLGPIAGDMDEADSVFLKLKQTADDSLSLTSSNAESVFIEDPYIASLRCE
IESDAHEFEAESWSLSVDLAYAKKQKKEVVKRQDVLYELMQTEAHHVRTLKIMLKVYSRALQEELQFSGQ
AVSRLFPCADDLLDMHSHFLARLKERRQEFLEEGSDRNYVIQKIGDVLVQQFSGETGERMKEKYAVFCSG
HNDAVGQYKLLLQQSKKFQNLIKKIGNFSIVRRLGVQECILLVTQRITKYPVLVERIIQNTEAGTEDYKD
LSQALSLIKDIISQVDAKVSEYEKDQRLKEIAAKTDQKSSGKLKNGLTFRKEDMLQQRQLHLEGALCWKS
TSGRLKDVLAVLLTDVLLLLQEKDQKYVFASVDSKPPVISLQKLIVREVANEEKAMFLISASMQGPEMYE
MYTSSKEDRNIWMAHIRRAVESCPDEEEDVFSEAEEKKIAEARTMKLQEFQERLSLKDQLIAQSLLEKQQ
IYLEMAQLSGLEESAQNRGLFRGGGDPSETLRGEQILRSAMSEIEGIQSLICQRHLGSTSSQVEEGSVSA
GLPRRAETFGGYDSVGSPSKGGSFKRKVSNSDLRPQDWQGPASSPDSRPCDNSAPSGCCEESPQAVEMPS
TESLPTVLELELVHRVQTLSQLLLSLQAVIAQQDSYVEMQRTAIQEREKQFRLQSTRGNLLLEQERQRNF
EKQREERAGVEKLQSQLRQEQQRWERERARQQQELELAGARLQEREGEARQMRQRLDQERTELERQRQAY
QHDLERLREAQRAVDRERERLELLRRFKKQNTVPGALPPEVLAEAQPASHPPSFNGDGLEGHSAPAKAPG
TQGSAMLHGTGPDNVERPEVARWDSAPPESRPAKSDVPIQLLSATNQIQRQTAVQQQIPTKLAASTKGGK
EKGSKSRGSQRWESSASFDLKQQLLLSKFIGKDESASRNRRSLSPVLPAAHGSAPASDPCFPAPSPAPAA
TPPEAFKFGGTSLPPVSPASSLPTTPLATTDEVSKEDVIFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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