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Report for CCDS21934.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21934.1 Public Mus musculus 7 Uros 23 108 98 CCDS HistoryNCBI Gene:22276Re-query CCDS DB by CCDS ID:21934.1Re-query CCDS DB by GeneID:22276See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21934.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033276.10 ENSMUSP00000033276.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033276.10Link to Ensembl Protein Viewer:ENSMUSP00000033276.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033276Re-query CCDS DB by Protein ID:ENSMUSP00000033276
Original member Current member EBI ENSMUST00000106145.9 ENSMUSP00000101751.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106145.9Link to Ensembl Protein Viewer:ENSMUSP00000101751.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000106145Re-query CCDS DB by Protein ID:ENSMUSP00000101751
Original member Current member EBI ENSMUST00000106146.7 ENSMUSP00000101752.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106146.7Link to Ensembl Protein Viewer:ENSMUSP00000101752.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106146Re-query CCDS DB by Protein ID:ENSMUSP00000101752
Original member Current member NCBI NM_001302085.1 NP_001289014.1 Accepted alive Link to Nucleotide Sequence:NM_001302085.1Link to Protein Sequence:NP_001289014.1Re-query CCDS DB by Nucleotide ID:NM_001302085Re-query CCDS DB by Protein ID:NP_001289014Link to BLAST:NP_001289014.1
Original member Current member NCBI NM_001302087.1 NP_001289016.1 Accepted alive Link to Nucleotide Sequence:NM_001302087.1Link to Protein Sequence:NP_001289016.1Re-query CCDS DB by Nucleotide ID:NM_001302087Re-query CCDS DB by Protein ID:NP_001289016Link to BLAST:NP_001289016.1
Original member Current member NCBI NM_001360164.1 NP_001347093.1 Accepted alive Link to Nucleotide Sequence:NM_001360164.1Link to Protein Sequence:NP_001347093.1Re-query CCDS DB by Nucleotide ID:NM_001360164Re-query CCDS DB by Protein ID:NP_001347093Link to BLAST:NP_001347093.1
Original member Current member NCBI NM_009479.3 NP_033505.1 Accepted alive Link to Nucleotide Sequence:NM_009479.3Link to Protein Sequence:NP_033505.1Re-query CCDS DB by Nucleotide ID:NM_009479Re-query CCDS DB by Protein ID:NP_033505Link to BLAST:NP_033505.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289014.1 265 P51163 265 100% 0 0
NP_001289016.1 265 P51163 265 100% 0 0
NP_001347093.1 265 P51163 265 100% 0 0
NP_033505.1 265 P51163 265 100% 0 0

Chromosomal Locations for CCDS 21934.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 133686979 133687116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133689582 133689680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133690508 133690593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133691086 133691166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133697669 133697743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133699144 133699218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133700814 133700910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133701839 133701922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133702330 133702392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (798 nt):
ATGAAGGTTCTCTTACTAAAAGACGCCAAGGAGGATGACAGCGGCCTGGATCCATATATCCAGGAGCTGC
GATTGTGTGGCCTAGAAGCCACACTGATTCCTGTGCTGTCATTTGAGTTTATGTCTCTCCCCAGTTTGTC
AGAAAAGCTGTCTCATCCTGAAGGCTTTGGAGGACTCATTTTCACCAGCCCCAGGGCAGTGGAAGCAGTG
AAGCTGTGTTTGGAGAAGGACAATAAAACTGAAGCCTGGGAGAAGTCTCTGAAAGACAGATGGAATGCCA
AGTCTGTGTACGTGGTTGGAAGTGCCACCGCTTCTCTAGTGAATAAAATTGGTCTGGATGCAGAAGGAGC
GGGCAGTGGAAATGCAGAAAAGCTTGCTGAATATATTTGCTCAAAGCCATCTTCAGAGCTGCCTCTTCTC
TTTCCGTGTGGAACTATCAAAGGAGATACTCTTCCAAAAATGCTCAAGGACAAAGGGATCCCCATGGAAA
GCATGCATGTCTATCAGACAGTTCCACACCCTGGGATCCAAGGGAGCCTGAAGAGCTACTATGAAGATCA
GGGTATCCCAGCCAGCATCACGTTTTTCAGTCCCTCCGGCCTTAAATACAGCCTCGAGTATATTCAGGCG
TTATCTGGCAGCAGCTTTGACCAGATTAAGTTTATAGCCATTGGCCCCAGTACAACCCGTGCTATGGCTG
CTAAGGGCCTGCCTGTGAGCTGCACTGCAGAGAGCCCCACACCACAAGCCCTGGCTGCAGGCATCAGGAA
TGTGCTGAAGCCAAACCACTGTTGCTGA

Translation (265 aa):
MKVLLLKDAKEDDSGLDPYIQELRLCGLEATLIPVLSFEFMSLPSLSEKLSHPEGFGGLIFTSPRAVEAV
KLCLEKDNKTEAWEKSLKDRWNAKSVYVVGSATASLVNKIGLDAEGAGSGNAEKLAEYICSKPSSELPLL
FPCGTIKGDTLPKMLKDKGIPMESMHVYQTVPHPGIQGSLKSYYEDQGIPASITFFSPSGLKYSLEYIQA
LSGSSFDQIKFIAIGPSTTRAMAAKGLPVSCTAESPTPQALAAGIRNVLKPNHCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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