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Report for CCDS21809.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21809.1 Public Mus musculus 7 Ndufab1 23 108 98 CCDS HistoryNCBI Gene:70316Re-query CCDS DB by CCDS ID:21809.1Re-query CCDS DB by GeneID:70316See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21809.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033157.9 ENSMUSP00000033157.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033157.9Link to Ensembl Protein Viewer:ENSMUSP00000033157.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000033157Re-query CCDS DB by Protein ID:ENSMUSP00000033157
Original member Current member EBI ENSMUST00000123296.7 ENSMUSP00000116177.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000123296.7Link to Ensembl Protein Viewer:ENSMUSP00000116177.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000123296Re-query CCDS DB by Protein ID:ENSMUSP00000116177
Original member Current member NCBI NM_001360743.1 NP_001347672.1 Accepted alive Link to Nucleotide Sequence:NM_001360743.1Link to Protein Sequence:NP_001347672.1Re-query CCDS DB by Nucleotide ID:NM_001360743Re-query CCDS DB by Protein ID:NP_001347672Link to BLAST:NP_001347672.1
Original member Current member NCBI NM_001360744.1 NP_001347673.1 Accepted alive Link to Nucleotide Sequence:NM_001360744.1Link to Protein Sequence:NP_001347673.1Re-query CCDS DB by Nucleotide ID:NM_001360744Re-query CCDS DB by Protein ID:NP_001347673Link to BLAST:NP_001347673.1
Original member Current member NCBI NM_028177.4 NP_082453.2 Accepted alive Link to Nucleotide Sequence:NM_028177.4Link to Protein Sequence:NP_082453.2Re-query CCDS DB by Nucleotide ID:NM_028177Re-query CCDS DB by Protein ID:NP_082453Link to BLAST:NP_082453.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347672.1 156 Q9CR21 156 100% 0 0
NP_001347673.1 156 Q9CR21 156 100% 0 0
NP_082453.2 156 Q9CR21 156 100% 0 0

Chromosomal Locations for CCDS 21809.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 122091594 122091685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 122093617 122093704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 122096609 122096731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 122101655 122101822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (471 nt):
ATGGCGTCTCGTGTCCTCTGCGCCTGTGTCCGCCGCCTGCCCGCGGCCTTCGCGCCGCTGCCCCGGCTTC
CCACGTTGGCCTTGGCGCGGCCGCTCAGCACCACCCTATGCCCTGAGGGAATCCGGAGGAGACCCGGGGC
TCTGCAGTCCGCCTTGGCGCTCGCGCAGGTGCCTGGAACAGTCACACATTTGTGCCGCCAGTACAGTGAC
GCACCCCCACTGACGTTAGACGGAATCAAGGACCGAGTTCTGTATGTCTTGAAACTCTATGATAAGATTG
ATCCAGAAAAGCTCTCCGTAAATTCTCATTTTATGAAGGACCTGGGCTTAGACAGTTTGGACCAAGTGGA
AATTATTATGGCCATGGAAGACGAATTTGGGTTTGAAATTCCTGATATAGATGCAGAGAAGTTAATGTGT
CCACAAGAAATTGTAGATTACATTGCAGATAAGAAGGATGTGTATGAATAA

Translation (156 aa):
MASRVLCACVRRLPAAFAPLPRLPTLALARPLSTTLCPEGIRRRPGALQSALALAQVPGTVTHLCRQYSD
APPLTLDGIKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMC
PQEIVDYIADKKDVYE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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