NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21378.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21378.1 Public Mus musculus 7 Hapln3 23 108 98 CCDS HistoryNCBI Gene:67666Re-query CCDS DB by CCDS ID:21378.1Re-query CCDS DB by GeneID:67666See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21378.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000206092.1 ENSMUSP00000146090.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206092.1Link to Ensembl Protein Viewer:ENSMUSP00000146090.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206092Re-query CCDS DB by Protein ID:ENSMUSP00000146090
Original member Current member NCBI NM_178255.3 NP_839986.2 Accepted alive Link to Nucleotide Sequence:NM_178255.3Link to Protein Sequence:NP_839986.2Re-query CCDS DB by Nucleotide ID:NM_178255Re-query CCDS DB by Protein ID:NP_839986Link to BLAST:NP_839986.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_839986.2 359 Q80WM5 359 100% 0 0

Chromosomal Locations for CCDS 21378.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 79117210 79117493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79117849 79118151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79121647 79122015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79123370 79123493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGAGCCTGCTGTTCCTTGTCCTTCTCTCGCCATTTCCCTGCGTTTTGGGACTTCCATTCTACAATGGCT
TCTACTATTCCAATGATCTGAGTGGCAGGACCCTGGGAAATGGCTACGGGGAAGGCCTATTCAATGGCGT
GAAGTTAGTGGTGGAGACGACGGAGGAGTCCCTGTTCAGTCACCAAGGAGCCAGCGTGACCCTGCCCTGC
CACTACCACTATGAGCCAGCCCTGGCATCCCCAAGACATGTGCGTGTTAAGTGGTGGAAGTTGTCAGAGA
ATGGAGCCCCAGAACAGGACGTGCTGGTGGTCATCGGGCAGAGGCACCGCTCCTTTGGGGACTACCAAGG
GCGAGTTCAACTGAGACAGGACAAGCAGCAGGAAGTCTCGCTGGAGCTTCGAGACCTGCGGCTGGAGGAC
TCTGGGCGCTACCGCTGCGAGGTCATCGATGGCCTGGAAGATGAGAGTGGCCTGGTAGAGCTGGAGCTTC
GGGGTGTGGTTTTTCCCTACCAGTCCCGCGAAGGGCGCTACCAGCTCAACTTCCACGAGGCCCAACAGGC
CTGCCAGGAGCAGGGTGCTATGGTAGCCACTTTTGAGCAGCTTTTCCGAGCCTGGGAGGAAGGCCTAGAC
TGGTGCAATGCAGGCTGGCTGCAGGATGCCTCCGTGCAGTACCCAATAGTGCTGCCCCGGCAGCCCTGTG
GAGGCCTGGGTCTGGCACCTGGTGTTCGCAGCTATGGCCAGCGCCACCACCGCCTGCATCGTTATGATGT
GTTCTGCTTTGCTGCTGCCCTCAAGGGGCGGGTGTACTACCTGGAGAACCCCAAGAAGCTGACGCTGCTG
GAGGCCCGGGAGGCCTGTCAGGAAGATGGTGCACAGATCTCCACGGTGGGCCAGCTCTTTGCGGCTTGGA
AGTTCCGTGGCCTGGATCGTTGTGATGCTGGCTGGCTGGCAGACGGAAGTGCCCGCTACCCTATAGTTCA
CCCTCGACTCAACTGTGGCCCCCCTGAGCCTGGAGTACGGACCTTTGGCTTCCCAGACCCCCACACCCGC
TATGGTGTCTACTGCTATGTCCAGCATTAG

Translation (359 aa):
MSLLFLVLLSPFPCVLGLPFYNGFYYSNDLSGRTLGNGYGEGLFNGVKLVVETTEESLFSHQGASVTLPC
HYHYEPALASPRHVRVKWWKLSENGAPEQDVLVVIGQRHRSFGDYQGRVQLRQDKQQEVSLELRDLRLED
SGRYRCEVIDGLEDESGLVELELRGVVFPYQSREGRYQLNFHEAQQACQEQGAMVATFEQLFRAWEEGLD
WCNAGWLQDASVQYPIVLPRQPCGGLGLAPGVRSYGQRHHRLHRYDVFCFAAALKGRVYYLENPKKLTLL
EAREACQEDGAQISTVGQLFAAWKFRGLDRCDAGWLADGSARYPIVHPRLNCGPPEPGVRTFGFPDPHTR
YGVYCYVQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH