NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21317.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21317.1 Public Mus musculus 7 Nipa1 23 108 98 CCDS HistoryNCBI Gene:233280Re-query CCDS DB by CCDS ID:21317.1Re-query CCDS DB by GeneID:233280See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21317.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052204.5 ENSMUSP00000053871.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052204.5Link to Ensembl Protein Viewer:ENSMUSP00000053871.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000052204Re-query CCDS DB by Protein ID:ENSMUSP00000053871
Original member Current member NCBI NM_153578.3 NP_705806.1 Accepted alive Link to Nucleotide Sequence:NM_153578.3Link to Protein Sequence:NP_705806.1Re-query CCDS DB by Nucleotide ID:NM_153578Re-query CCDS DB by Protein ID:NP_705806Link to BLAST:NP_705806.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705806.1 323 Q8BHK1 323 100% 0 0

Chromosomal Locations for CCDS 21317.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 55979392 55979903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55985404 55985564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55996434 55996524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55997516 55997563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 56019409 56019568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGGGACTGCGGCGGCGGCTGCGGCGGCCGGGGAGGGGGCGCGCGGCCCGAGCCCCGCCGCCGTGTCGC
TCGGCCTGGGCGTGGCTGTGGTGTCCAGCCTAGTGAACGGGTCCACGTTCGTGCTGCAGAAGAAGGGCAT
TGTGCGCGCTAAAAGGCGAGGTACTTCCTACCTAACAGACATTGTGTGGTGGGCTGGCACAATTGCAATG
GCTGTCGGCCAGATTGGAAACTTTCTAGCTTACACTGCGGTCCCTACAGTCCTGGTGACTCCCTTAGGTG
CCCTTGGAGTACCGTTTGGGTCCATTTTAGCTTCTTACCTTCTGAAGGAAAAGCTCAACATCTTGGGCAA
GTTGGGCTGTCTGCTAAGCTGCGCAGGTTCTGTCGTGCTGATCATCCATTCCCCGAAGTCTGAGAGTGTG
ACCACGCAGGCCGAGTTGGAGGAGAAGCTGACCAATCCAGTGTTTGTGGGCTACCTGTGCATCGTGCTGC
TCATGCTGCTGCTGTTGATCTTCTGGATCGCACCAGCCCACGGGCCCACCAACATCATGGTCTACATCAG
CATCTGCTCCTTGCTGGGGAGTTTCACTGTGCCTTCCACCAAGGGCATTGGGCTGGCAGCCCAAGACATC
TTGCACAACAATCCATCCAGTCAGAGAGCCCTCTGCCTGTGCCTGGTGCTCCTGGCTGTCCTGGGCTGCA
GCATCATTGTCCAATTCAGGTACATCAACAAGGCCCTGGAGTGCTTCGACTCCTCTGTATTTGGGGCCAT
CTACTACGTTGTGTTTACCACGCTGGTCCTACTGGCTTCAGCCATCCTCTTCCGGGAGTGGAGCAATGTG
GGCCTGGTGGACTTCTTGGGCATGGCCTGTGGATTTACAACTGTCTCCGTGGGAATTGTCCTCATACAAG
TGTTCAAAGAATTCAACTTCAACCTTGGAGAGATGAACAAATCCAATATGAAAACAGACTAA

Translation (323 aa):
MGTAAAAAAAGEGARGPSPAAVSLGLGVAVVSSLVNGSTFVLQKKGIVRAKRRGTSYLTDIVWWAGTIAM
AVGQIGNFLAYTAVPTVLVTPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVVLIIHSPKSESV
TTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISICSLLGSFTVPSTKGIGLAAQDI
LHNNPSSQRALCLCLVLLAVLGCSIIVQFRYINKALECFDSSVFGAIYYVVFTTLVLLASAILFREWSNV
GLVDFLGMACGFTTVSVGIVLIQVFKEFNFNLGEMNKSNMKTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH