NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21234.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21234.2 Public Mus musculus 7 Kash5 23 108 98 CCDS HistoryNCBI Gene:384619Re-query CCDS DB by CCDS ID:21234.2Re-query CCDS DB by GeneID:384619See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 21234.2
The coding region has been updated to extend the N-terminus. The use of an alternative upstream start codon, which appears to be rodent-specific, would result in a protein that is 70 aa longer at the N-terminal.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 21234.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121017.4 ENSMUSP00000113616.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121017.4Link to Ensembl Protein Viewer:ENSMUSP00000113616.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000121017Re-query CCDS DB by Protein ID:ENSMUSP00000113616
Original member Current member NCBI NM_201374.2 NP_958762.2 Accepted alive Link to Nucleotide Sequence:NM_201374.2Link to Protein Sequence:NP_958762.2Re-query CCDS DB by Nucleotide ID:NM_201374Re-query CCDS DB by Protein ID:NP_958762Link to BLAST:NP_958762.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_958762.2 648 Q80VJ8 648 100% 0 0

Chromosomal Locations for CCDS 21234.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45183750 45183891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45183992 45184108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45184189 45184253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45185278 45185329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45186652 45186710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45188142 45188297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45188612 45188699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45188853 45188917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45189341 45189400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45189637 45189693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45189950 45190027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45193176 45193226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45193459 45193576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45193960 45194121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45194350 45194416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45195529 45195593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45195968 45196154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45196507 45196611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45200245 45200385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45204592 45204703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGCACTCGATCCTCAGGTCCAGCCTATCCTCCCGAGAAGCTCTACGCATGCGCCAGCTCAAGGGTCTTC
GTAAGGAGAGACCCGGGCGCCATCCACTCGGAGTGCGCTTGCGAGCTATCTGGACATCCTTTCTTTTCCC
CAACCCTCCTCACAGTGGAGGGAAGCTGAGAGCTTCGACAGCAGCTGTAGAGGAGCATCAGGAGTGGTCC
ATGGACCTGCCGGAGGGCCAGGCTGGTGGTCCAACTGCACAGATGTACCTCTGGGAACAGCCCGAGGAAG
CGAGTTCAAGGCCACTGCTCAGCCTAGAGGAACAGATCCTTAACTCCACATTTGAAGCCTGTGACCCTCA
CAAGACAGGCACTGTGACTGTGGCCCACCTCCTGGCCTACCTGGAGGCTGTGACAGGACAGGGACCTCAG
GATGTGCGCCTCCAAACACTGGCCCGGAGCTTGGACCCTTATGGAGAGGGTGCTGGAGCCACTGTGGAAC
TGGACACCTTTCTGGTGGTCATGCGGGACTGGATTGCTGCCTGTCAGCTGCAGGGGGGATTAGAGCGGGC
AGAGGAGACCGCCTACGAGGGAGCCCTGGCTTCTCCACACCTGCCATCTGTGTGCCCAGAAGCTGAGGAG
TCAGCCAACTTAGAGAGCTTTGGAGGAGAAGACCCCAGGCCCGAGGGGCCTGCCACAGCTGAGCTGCTGA
GCAACCTGGAGGACCTAGAGCTAAGCAACCGGCGTCTTGCTGGTGAGAATGCCAAGCTACAACGCAGTGT
GGAGACTGCGGAGGAGGGCTCTGCACGCCTAGGGGAGGAGATCACAGCCCTGCGCAAGCAGCTGCGAAGT
ACCCAGCAGGCCCTGCAGGTGGCCAAGGCTTTGGATGAGGAGCTAGAGGACCTGAAGACTCTGGCCAAGA
GCCTAGAGGAGCAGAATCGCAGTCTGATGGCCCAGGCCCGGCACACAGAGAAGGAGCAGCAGCACCTGGC
GGCTGAGGTAGAGACGCTACAGGAGGAGAATGAGAAGCTGCTAGCTGAGAGAGATGGAGTGAAAAGGCGG
AGTGAGGAGTTGGCCACAGAGAAGGACGCTTTGAAGCGGCAGCTCTGTGAGTGCGAACGACTCATTTGCC
AGCGTGAAGCAGTCCTCTCAGAGCGTACCCGCCATGCAGAGAGTCTGGCCCGGACCTTGGAGGAGTACAG
AACTACCACCCAGGAACTAAGGCAAGAGATCTCAAACCTGGAGGAGCAGCTGAGTCAGAGCCAGGAAGGC
CCAGAGGAGCTGCTGGAAGGGGCTGAGGCAGGAAGAGTAGGCTGGATCATGGCCCTGCCCCCATCACTAG
ACTTGGAGATCCAAGCTATCCGACAGGAGCAGGATGTAGCCAGTGCTGGCCTCTCTAGTCCTCTGTATGG
AGTGTGGCAGTGGGAAGAGGTGGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCG
CAGGAGGTTGAGTTTCCCTCTGAGGACCCTGCTAGGCAACAGACAGACTTGCAGAGAGAGCCAGTGCGTG
CTCTAGAAGGAAGCAGAGCTCCATGCTTGCGGTTGTCCAGAAGCCAGGAAGAGGAGGAAGAAGAAGAGGA
GAGCTGGGTCCTGGCTGACCCTTCCAGCCCTCTGGGAACCTATCACCATAAACTTGCCCCAGGAAGCTCT
CGTGAGAGTTGCCACATTGTACCAGAGATGCACCAAGCCCTCATGCCTGTGGTGAGAGACCTGGTGCCAG
TTGAGAGGTCACGGACCCAGCACTGTCTGCATCCCCAGCACTCCCCAGGGATCAGAATCAGCCAGCACCC
ACTGGTCCCCACACCCGTCTTGGGCCTGCTGCTGCTGCTGCTGCTCTCCATCCTGCTGTTCAGCCAGTCC
CCGCCACCCACCTGGCCTCACCTGCAGCTCTACTACCTACAGCCGCCACCAGTGTGA

Translation (648 aa):
MHSILRSSLSSREALRMRQLKGLRKERPGRHPLGVRLRAIWTSFLFPNPPHSGGKLRASTAAVEEHQEWS
MDLPEGQAGGPTAQMYLWEQPEEASSRPLLSLEEQILNSTFEACDPHKTGTVTVAHLLAYLEAVTGQGPQ
DVRLQTLARSLDPYGEGAGATVELDTFLVVMRDWIAACQLQGGLERAEETAYEGALASPHLPSVCPEAEE
SANLESFGGEDPRPEGPATAELLSNLEDLELSNRRLAGENAKLQRSVETAEEGSARLGEEITALRKQLRS
TQQALQVAKALDEELEDLKTLAKSLEEQNRSLMAQARHTEKEQQHLAAEVETLQEENEKLLAERDGVKRR
SEELATEKDALKRQLCECERLICQREAVLSERTRHAESLARTLEEYRTTTQELRQEISNLEEQLSQSQEG
PEELLEGAEAGRVGWIMALPPSLDLEIQAIRQEQDVASAGLSSPLYGVWQWEEVEPEPEPEPEPEPEPEP
QEVEFPSEDPARQQTDLQREPVRALEGSRAPCLRLSRSQEEEEEEEESWVLADPSSPLGTYHHKLAPGSS
RESCHIVPEMHQALMPVVRDLVPVERSRTQHCLHPQHSPGIRISQHPLVPTPVLGLLLLLLLSILLFSQS
PPPTWPHLQLYYLQPPPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH