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Report for CCDS21157.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21157.1 Public Mus musculus 7 Uri1 23 108 98 CCDS HistoryNCBI Gene:19777Re-query CCDS DB by CCDS ID:21157.1Re-query CCDS DB by GeneID:19777See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21157.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085513.5 ENSMUSP00000082646.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085513.5Link to Ensembl Protein Viewer:ENSMUSP00000082646.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000085513Re-query CCDS DB by Protein ID:ENSMUSP00000082646
Original member NCBI NM_011274.5 NP_035404.4 Updated not alive Link to Nucleotide Sequence:NM_011274.5Link to Protein Sequence:NP_035404.4Re-query CCDS DB by Nucleotide ID:NM_011274Re-query CCDS DB by Protein ID:NP_035404
Current member NCBI NM_011274.6 NP_035404.4 Accepted alive Link to Nucleotide Sequence:NM_011274.6Link to Protein Sequence:NP_035404.4Re-query CCDS DB by Nucleotide ID:NM_011274Re-query CCDS DB by Protein ID:NP_035404Link to BLAST:NP_035404.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035404.4 531 Q3TLD5-1 531 100% 0 0

Chromosomal Locations for CCDS 21157.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 37961515 37961697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37962466 37962709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37963393 37963532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37965231 37965579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37967321 37967489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37969380 37969437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37969606 37969697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37981611 37981746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37982870 37982948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 37996687 37996721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 38019110 38019220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1596 nt):
ATGGAGCCCCCGTCCGAACCCGAGCCCGAGCCCCAGCCCCTTGCAGAGGCCTCAGCCGCCGCTCCGCTGC
GCGCACCAGAGGTGGCGCGGCTTCGCGAGGAGCAGGAAAAGGTGGTCACTAACTGCCAAGAGAAAATCCA
GCATTGGGAGAAAGTAGACAATGACTACAGTGCTCTTCAAGAGAGGCTGAGGACCTTGCCTGACAAGCTG
TCTTACGACGTCATGGTACCATTCGGCCCTCTTGCCTTCATGCCAGGAAAACTAGTCCACACTAATGAAG
TCACTGTTTTACTTGGCGACAACTGGTTTGCAAAGTGCTCAGCCAAGCAGGCTGTGGGTTTAGTTGAGCA
TCGGAAAGAACATGTAAGAAAAACAATAGATGATTTTAAAAAAGTGTTGAAAAATTTTGAATCCAGAGTT
GAATTCACAGAAGATTTGCAGAAGATGAGTGATGCTGCAGGTGATTTTGTTGACATAAGAGAAGAAATTA
AAAGTGACTTTGAATTTAAAGGAAAACAACGAATTGCTCACAAACCTCATTCCAAACCAAAAACTTCAGA
TATTTTTGAAGCAGATTTTGAAAATGGTGTAAAACCCAAGAATACATTTGATGCTGATGAACTGTGGGCT
CGACTTGAAGAGCTGGAGAGACAAGAAGAACTGCTGGGTGAACTTGAAAGTAAACCTGATACTGTGATTG
CAAATGGAGAAGACAGAGTGTCTTCTGAGGAGGAAAAGGAAGGTGCAGACACAGGTGTGAATGTGGTGTC
TCCAGTGACAGACTCCTCTGCCGCCAGCAGCTGTAAAAGGCGTGCTGGAAATGCAGGACTCCCTAATGGT
CAAGTCAATAGTCTGAACTATTCAGTGAATGGCTCAAATTCTTACCACAGCAACAAAGATGATGATGAAG
AAGAAGAAGATGACGATGATGATGATGATGAAGATGACGATAATGAAAGTGACCATGCTATTTCAGCAGA
TAATTCTATTCCAACAATATATTTCTCTCATACTGTTGAACCTAAAAGGGTTCGAATAAATACTGGGAAA
AATACCACTTTAAAGTTCAGTGAGAAGAAAGAGGAAGCCAAACGGAAACGAAAGAGTGGTGCCGGCAGTC
ACGCTACCCACGAGCTGCCTGCCATCAAGAGTCCTGCTGATATTTACAGAGTCTTCGTGGATGTTGTGAA
TGGAGAATATGTTCCTCGCAAGTCAATCCTCAAGTCTCGCAGCCGAGAGAACAGCGTGTGCAGCGACACA
AGTGAGAGCAGCGCTGCCGATGTGGAGGACCGGCGGGGGCTCCTGCGGAGCACCAGCTCTGAGGAGGCCG
TGGCTACCGAGGCCGGCGGGAGCAGTTTGGACGAACTCCAAGAGAACCACCCCAAGAAGCCTTTGCCCTC
AGGAGTGTCTGAGGCTTTTTCTGGAACTGTAATAGAAAAAGAATTTTTATCACCCTCCCTAGCACCATAC
TCAGCCATTGCTCACCATGCCCTCCCCACCATTCCAGAGCGAAAAGAAGTTCCATCAGAAGTATCAGAGG
AACCCACAAAGAGGGTGTCAAAGTTCAGAGCTGCCCGATTGCAGCAGAGAAGCTAG

Translation (531 aa):
MEPPSEPEPEPQPLAEASAAAPLRAPEVARLREEQEKVVTNCQEKIQHWEKVDNDYSALQERLRTLPDKL
SYDVMVPFGPLAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDFKKVLKNFESRV
EFTEDLQKMSDAAGDFVDIREEIKSDFEFKGKQRIAHKPHSKPKTSDIFEADFENGVKPKNTFDADELWA
RLEELERQEELLGELESKPDTVIANGEDRVSSEEEKEGADTGVNVVSPVTDSSAASSCKRRAGNAGLPNG
QVNSLNYSVNGSNSYHSNKDDDEEEEDDDDDDDEDDDNESDHAISADNSIPTIYFSHTVEPKRVRINTGK
NTTLKFSEKKEEAKRKRKSGAGSHATHELPAIKSPADIYRVFVDVVNGEYVPRKSILKSRSRENSVCSDT
SESSAADVEDRRGLLRSTSSEEAVATEAGGSSLDELQENHPKKPLPSGVSEAFSGTVIEKEFLSPSLAPY
SAIAHHALPTIPERKEVPSEVSEEPTKRVSKFRAARLQQRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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