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Report for CCDS21042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21042.1 Public Mus musculus 7 Med29 16 104 75 CCDS HistoryNCBI Gene:67224Re-query CCDS DB by CCDS ID:21042.1Re-query CCDS DB by GeneID:67224

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Sequence IDs included in CCDS 21042.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000003536 ENSMUSP00000003536 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003536Link to Ensembl Protein Viewer:ENSMUSP00000003536Re-query CCDS DB by Nucleotide ID:ENSMUST00000003536Re-query CCDS DB by Protein ID:ENSMUSP00000003536
Original member Current member EBI,WTSI OTTMUST00000057967 OTTMUSP00000028031 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000057967Link to Vega Protein Viewer:OTTMUSP00000028031Re-query CCDS DB by Nucleotide ID:OTTMUST00000057967Re-query CCDS DB by Protein ID:OTTMUSP00000028031
Original member Current member NCBI NM_026042.3 NP_080318.2 Accepted alive Link to Nucleotide Sequence:NM_026042.3Link to Protein Sequence:NP_080318.2Re-query CCDS DB by Nucleotide ID:NM_026042Re-query CCDS DB by Protein ID:NP_080318Link to BLink:NP_080318.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080318.2 199 Q9DB91 199 100% 0 0

Chromosomal Locations for CCDS 21042.1

Assembly GRCm38.p2 (GCF_000001635.22)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 7Link to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7

Chromosome Start Stop Links
7 28386782 28387024 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7
7 28390812 28390896 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7
7 28391090 28391148 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7
7 28392451 28392663 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7Link to Vega Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternate exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGGCTGCGCCCCAGCCACAGGCTGCAGCGGTTTCCTCTGCGTCTGGTGTGTCAGGCCCGGGTTCTGCCG
GG
GGTCCGGGTCCCCAGCAACAGCCACAACCGACCCAGTTGGTGGGTTCTGCCCAGAGCGGGCTCCTGCA
G
CAGCAGCAGCAGGACTTCGATCCTGTGCAGCGCTACAAGATGCTCATCCCGCAACTGAAGGAGAGTCTC
CAG
ACTTTGATGAAGGTTGCAGCCCAGAATCTGATTCAGAACACTAACATTGACAATGGACAGAAGAGCA
GT
GACGCACCCTTGCAGCGCTTTGACAAGTGTTTGGAGGAGTTTTACGCACTCTGTGATCAGCTGGAACT
C
TGCTTGCGCCTGGCCCACGAGTGCCTTTCACAGAGCTGTGACAGCGCCAAACACTCTCCAACACTGGTA
CCC
ACAGCCACAAAGCCAGATGCAGTGCAGCCAGACAGTCTGCCCTACCCACAGTACCTGGCTGTCATCA
AA
GCCCAGATCACCTGTGCCAAAGACATTCATACTGCCCTGCTGGACTGTGCCAACAAGGTCACTGGAAA
G
ACTACTGCACCCTCTACTGGCCCTGGGGGCAGCCTCTGA


Translation (199 aa):
MAAPQPQAAAVSSASGVSGPGSAGGPGPQQQPQPTQLVGSAQSGLLQQQQQDFDPVQRYKMLIPQLKESL
Q
TLMKVAAQNLIQNTNIDNGQKSSDAPLQRFDKCLEEFYALCDQLELCLRLAHECLSQSCDSAKHSPTLV
P
TATKPDAVQPDSLPYPQYLAVIKAQITCAKDIHTALLDCANKVTGKTTAPSTGPGGSL




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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