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Report for CCDS20910.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20910.1 Public Mus musculus 7 Apoc4 23 108 98 CCDS HistoryNCBI Gene:11425Re-query CCDS DB by CCDS ID:20910.1Re-query CCDS DB by GeneID:11425See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20910.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003071.9 ENSMUSP00000003071.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003071.9Link to Ensembl Protein Viewer:ENSMUSP00000003071.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000003071Re-query CCDS DB by Protein ID:ENSMUSP00000003071
Original member Current member NCBI NM_007385.3 NP_031411.1 Accepted alive Link to Nucleotide Sequence:NM_007385.3Link to Protein Sequence:NP_031411.1Re-query CCDS DB by Nucleotide ID:NM_007385Re-query CCDS DB by Protein ID:NP_031411Link to BLAST:NP_031411.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031411.1 124 Q61268 124 100% 0 0

Chromosomal Locations for CCDS 20910.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19678147 19678312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19678610 19678742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19681305 19681380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (375 nt):
ATGTCCCTGCTGAGGTGCAGGCCACGGGACCTGCCATCAGTCTCCCTTTCTGTGCTGTTCTTGGTCAGCT
TTGTAGCATCCATGTCTACAGAAAGCCTGAGCCCCACGCCTGGCCCTGAGAGCAGCCGCTGGAGCCTGGT
AAGGGCCAGGGTGTTGGAGATGGTGGAGCCACTGGTGACCAGAACCAGGGACAGATGGCAGTGGTTCTGG
GGCCCTGGAGCTGTCCAGGGCTTTATGCAGACCTACTATGAAGATCACCTGAAAGACCTGGGTCCCCGAA
CTCAGGCCTGGCTGCAGAGCTCCAGAGACCACCTCCTAAACAAGACCCACAGCCTGTGTCCCAGACTGCT
CTGCAAAGACCGGACTCAGGGTTAA

Translation (124 aa):
MSLLRCRPRDLPSVSLSVLFLVSFVASMSTESLSPTPGPESSRWSLVRARVLEMVEPLVTRTRDRWQWFW
GPGAVQGFMQTYYEDHLKDLGPRTQAWLQSSRDHLLNKTHSLCPRLLCKDRTQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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