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Report for CCDS20775.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20775.1 Public Mus musculus 7 Zfp78 23 108 98 CCDS HistoryNCBI Gene:330463Re-query CCDS DB by CCDS ID:20775.1Re-query CCDS DB by GeneID:330463See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20775.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086323.10 ENSMUSP00000083503.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086323.10Link to Ensembl Protein Viewer:ENSMUSP00000083503.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000086323Re-query CCDS DB by Protein ID:ENSMUSP00000083503
Original member Current member EBI ENSMUST00000207314.1 ENSMUSP00000146578.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207314.1Link to Ensembl Protein Viewer:ENSMUSP00000146578.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207314Re-query CCDS DB by Protein ID:ENSMUSP00000146578
Original member Current member EBI ENSMUST00000208030.1 ENSMUSP00000146592.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208030.1Link to Ensembl Protein Viewer:ENSMUSP00000146592.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208030Re-query CCDS DB by Protein ID:ENSMUSP00000146592
Original member Current member EBI ENSMUST00000208390.1 ENSMUSP00000147228.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208390.1Link to Ensembl Protein Viewer:ENSMUSP00000147228.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208390Re-query CCDS DB by Protein ID:ENSMUSP00000147228
Original member Current member NCBI NM_001112805.1 NP_001106276.1 Accepted alive Link to Nucleotide Sequence:NM_001112805.1Link to Protein Sequence:NP_001106276.1Re-query CCDS DB by Nucleotide ID:NM_001112805Re-query CCDS DB by Protein ID:NP_001106276Link to BLAST:NP_001106276.1
Original member Current member NCBI NM_177888.4 NP_808556.1 Accepted alive Link to Nucleotide Sequence:NM_177888.4Link to Protein Sequence:NP_808556.1Re-query CCDS DB by Nucleotide ID:NM_177888Re-query CCDS DB by Protein ID:NP_808556Link to BLAST:NP_808556.1

Chromosomal Locations for CCDS 20775.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 6371364 6371396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6373127 6373253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6378209 6379491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGACAGTTGAACTAATGAAAGCCATGCTACAGGAAGCAGTGACATTCAACGATGTTGCAATAGACTTTT
CTCCGGAGGAGTGGGACTGGCTGAATCCTGCTCAGAGGAGTTTGTACAGGACTGTGGTGCTGGAGAACTA
CCGGAACTTGGTCTCTGTGGGTGGTAAATCTGTACAGAAGACACACGAATTATCTCTCAGGCAGTTGGTG
TTTGAGGATGTGGCAGTGGAGAACACTACAAGTCTTGGTTGTGAGTCTCTCACTTCTGGAAGGAAGCAGA
AATGCAAAGACCTTCTGGATAGACAGATGAGTCAAGAAATATTTAACCTGAAAGAAACAGTCACTCACAA
AGGAACCCACACTAAAGAAATAGGCTACAAACACACCGAATCCTTAAAATCTGCCCATCTGGATAGTGTA
GAAGAGAATATTTATACTCACAAGTCAAATAAGAAAAGCTTCTCCAAAAATCCCAAGGTATGGAAATACA
AGAAAATCTGGGCAGGGAAGACCATTTTTAAATGTAATGAATGTGAGAAAACCTTCACCCACAGCTCAGC
TGTTACAGTTCACCAGAGAATTCACACGGGGGAGAAACCATATCAATGCACCGTCTGCGGAAAGGCCTTC
AAGCAGAGCCACCACCTGGCTCAGCACCACACAACACACACCCACGAGAAACTCTTCCAGTGTGAGGAAT
GTAAGAAAGCCTTCAGCCAGAATTCATACCTCACTGTACACCGGAGAATTCACACCGGAGAAAAACCGTA
TAAATGTAAGGAGTGCGCAAAGTCCTTCAGGCAGCCTGCCCACCTGGCTCAGCACCACAGGATTCACACG
GGTGAGAAACCTTACAAGTGTGAAATCTGTGGGAAAGCCTTTAACCACAGCATGTCACTCACTGGCCACC
AAAGAGTACATTCTGGAGAGAAACCATATAAATGCAAGGACTGTGGGAAAGCTTTTCGGCAGAGTATACA
CCTTGTTGTTCACTCAAGAATTCATACTGGAGAAGAGCCCTATGAATGTAACGAATGTGGGAAGACCTTT
AGGGAGAGTTCCCAGCTGACTATTCATCAGAGAAACCACACGGGAGAAAAACCTTTTGAATGTAAGCAGT
GTGGTAAATTTTTCAATAGAAGTGCCTATCTTGCCAGACATCAGAAAATCCATACAGGAGAGAAACCTTA
TGAGTGTAATGAATGCGGCAAAACCTTCACACATGCTGCCTATCTTATAAGACACAAGAGGGTCCATACT
GGAGAGAAGCCTTACAAATGTGCGGAATGTGGAAAGGCATTTGGTGATGGCTCCTCCCGTGCTCAGCATC
AGAGACTTCACACTGGTCAGAGGCCCTATGTATGTGAGAAATGTGGAAGGGCCTTCAGAAGAAAGTCATC
CCTTAATTGCCACCAAAGGTATCACACTGGAAAGAAACTGTAA

Translation (480 aa):
MTVELMKAMLQEAVTFNDVAIDFSPEEWDWLNPAQRSLYRTVVLENYRNLVSVGGKSVQKTHELSLRQLV
FEDVAVENTTSLGCESLTSGRKQKCKDLLDRQMSQEIFNLKETVTHKGTHTKEIGYKHTESLKSAHLDSV
EENIYTHKSNKKSFSKNPKVWKYKKIWAGKTIFKCNECEKTFTHSSAVTVHQRIHTGEKPYQCTVCGKAF
KQSHHLAQHHTTHTHEKLFQCEECKKAFSQNSYLTVHRRIHTGEKPYKCKECAKSFRQPAHLAQHHRIHT
GEKPYKCEICGKAFNHSMSLTGHQRVHSGEKPYKCKDCGKAFRQSIHLVVHSRIHTGEEPYECNECGKTF
RESSQLTIHQRNHTGEKPFECKQCGKFFNRSAYLARHQKIHTGEKPYECNECGKTFTHAAYLIRHKRVHT
GEKPYKCAECGKAFGDGSSRAQHQRLHTGQRPYVCEKCGRAFRRKSSLNCHQRYHTGKKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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