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Report for CCDS20441.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20441.1 Public Mus musculus 6 Raf1 23 108 98 CCDS HistoryNCBI Gene:110157Re-query CCDS DB by CCDS ID:20441.1Re-query CCDS DB by GeneID:110157See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20441.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000451.13 ENSMUSP00000000451.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000451.13Link to Ensembl Protein Viewer:ENSMUSP00000000451.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000000451Re-query CCDS DB by Protein ID:ENSMUSP00000000451
Original member Current member EBI ENSMUST00000112949.7 ENSMUSP00000108571.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112949.7Link to Ensembl Protein Viewer:ENSMUSP00000108571.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112949Re-query CCDS DB by Protein ID:ENSMUSP00000108571
Original member Current member NCBI NM_001356334.2 NP_001343263.1 Accepted alive Link to Nucleotide Sequence:NM_001356334.2Link to Protein Sequence:NP_001343263.1Re-query CCDS DB by Nucleotide ID:NM_001356334Re-query CCDS DB by Protein ID:NP_001343263Link to BLAST:NP_001343263.1
Original member Current member NCBI NM_029780.4 NP_084056.1 Accepted alive Link to Nucleotide Sequence:NM_029780.4Link to Protein Sequence:NP_084056.1Re-query CCDS DB by Nucleotide ID:NM_029780Re-query CCDS DB by Protein ID:NP_084056Link to BLAST:NP_084056.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343263.1 648 Q99N57-1 648 100% 0 0
NP_084056.1 648 Q99N57-1 648 100% 0 0

Chromosomal Locations for CCDS 20441.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 115619266 115619409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115619559 115619693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115619785 115619916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115620209 115620327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115621816 115621862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115622877 115623053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115623464 115623548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115626291 115626408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115626712 115626839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115626939 115626966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115631215 115631368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115632897 115632995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115634553 115634710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115634978 115635080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115637599 115637711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115644410 115644616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGGAGCACATACAGGGAGCTTGGAAGACGATCAGCAATGGCTTTGGACTCAAAGATGCGGTGTTTGATG
GCTCCAGCTGCATCTCCCCTACCATTGTTCAGCAGTTTGGCTATCAGCGCCGGGCCTCAGATGATGGCAA
GCTCACGGATTCTTCTAAGACAAGCAATACTATCCGGGTTTTCTTGCCGAATAAGCAAAGGACTGTGGTC
AATGTGCGGAATGGAATGAGCTTACATGACTGCCTTATGAAAGCTCTGAAGGTGAGAGGCCTGCAGCCAG
AGTGCTGTGCAGTGTTCAGACTTCTCCAGGAACACAAAGGTAAGAAAGCACGCTTAGATTGGAACACCGA
TGCCGCCTCTCTGATTGGAGAAGAACTGCAAGTGGATTTTTTGGATCATGTTCCACTCACAACTCACAAC
TTTGCTCGGAAAACGTTCCTGAAGCTTGCATTCTGTGACATCTGTCAGAAGTTCCTGCTAAATGGATTTC
GATGTCAGACTTGTGGCTACAAGTTTCATGAGCACTGTAGCACCAAAGTACCTACTATGTGTGTGGACTG
GAGTAATATCAGACAGCTCTTGCTGTTTCCAAATTCCACTGTTGGTGACAGTGGAGTCCCAGCACCACCT
TCTTTCCCAATGCGTCGGATGCGAGAATCTGTTTCCCGGATGCCTGCTAGTTCCCAGCACAGATACTCTA
CACCCCATGCCTTCACTTTCAACACCTCCAGCCCTTCCTCAGAAGGTTCCCTGTCCCAGAGGCAGAGGTC
AACGTCCACTCCCAATGTCCACATGGTCAGCACCACCCTGCATGTGGACAGCAGGATGATTGAGGATGCA
ATTCGAAGTCACAGTGAATCAGCCTCACCTTCAGCCCTGTCCAGCAGCCCAAACAACCTGAGTCCAACAG
GCTGGTCACAGCCCAAAACCCCTGTGCCAGCACAAAGAGAGCGGGCACCAGGATCTGGGACCCAGGAAAA
AAACAAAATTAGGCCTCGTGGGCAGAGAGACTCGAGTTATTACTGGGAAATAGAAGCCAGTGAGGTGATG
CTGTCTACTCGGATCGGGTCAGGTTCCTTTGGCACTGTGTACAAGGGCAAGTGGCATGGAGATGTTGCAG
TAAAGATCCTAAAGGTGGTTGACCCAACTCCAGAGCAACTTCAGGCCTTCAGGAACGAGGTGGCTGTTTT
GCGCAAAACACGGCATGTTAACATCCTGCTGTTCATGGGGTACATGACAAAGGACAACCTGGCGATTGTG
ACTCAGTGGTGTGAAGGCAGCAGTCTCTACAAACACCTGCATGTCCAGGAGACCAAATTCCAGATGTTCC
AGCTAATTGACATTGCCCGACAGACAGCTCAGGGAATGGACTATTTGCATGCAAAGAACATCATCCACAG
AGACATGAAATCCAACAATATATTTCTCCATGAAGGCCTCACGGTGAAAATTGGAGATTTTGGTTTGGCA
ACAGTGAAGTCACGCTGGAGTGGTTCTCAGCAGGTTGAACAGCCCACTGGCTCTGTGCTGTGGATGGCCC
CAGAAGTAATCCGGATGCAGGATGACAACCCGTTCAGCTTCCAGTCCGACGTGTACTCGTACGGCATCGT
GCTGTACGAGCTGATGGCTGGGGAGCTTCCCTACGCCCACATCAACAACCGAGACCAGATCATCTTCATG
GTAGGCCGTGGGTATGCATCCCCTGATCTCAGCAGGCTCTACAAGAACTGCCCCAAGGCAATGAAGAGGT
TGGTGGCTGACTGTGTGAAGAAAGTCAAAGAAGAGAGACCTTTGTTTCCCCAGATCCTGTCTTCCATCGA
GCTGCTTCAGCACTCTCTGCCGAAAATCAACAGGAGCGCCTCTGAGCCTTCCCTGCATCGGGCAGCTCAC
ACTGAGGACATCAATGCTTGCACGCTGACTACATCCCCAAGGCTACCAGTCTTCTAG

Translation (648 aa):
MEHIQGAWKTISNGFGLKDAVFDGSSCISPTIVQQFGYQRRASDDGKLTDSSKTSNTIRVFLPNKQRTVV
NVRNGMSLHDCLMKALKVRGLQPECCAVFRLLQEHKGKKARLDWNTDAASLIGEELQVDFLDHVPLTTHN
FARKTFLKLAFCDICQKFLLNGFRCQTCGYKFHEHCSTKVPTMCVDWSNIRQLLLFPNSTVGDSGVPAPP
SFPMRRMRESVSRMPASSQHRYSTPHAFTFNTSSPSSEGSLSQRQRSTSTPNVHMVSTTLHVDSRMIEDA
IRSHSESASPSALSSSPNNLSPTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVM
LSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIV
TQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLA
TVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDDNPFSFQSDVYSYGIVLYELMAGELPYAHINNRDQIIFM
VGRGYASPDLSRLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPKINRSASEPSLHRAAH
TEDINACTLTTSPRLPVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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