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Report for CCDS20277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20277.1 Public Mus musculus 6 Mthfd2 23 108 98 CCDS HistoryNCBI Gene:17768Re-query CCDS DB by CCDS ID:20277.1Re-query CCDS DB by GeneID:17768See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20277.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005810.8 ENSMUSP00000005810.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005810.8Link to Ensembl Protein Viewer:ENSMUSP00000005810.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000005810Re-query CCDS DB by Protein ID:ENSMUSP00000005810
Original member Current member NCBI NM_008638.2 NP_032664.1 Accepted alive Link to Nucleotide Sequence:NM_008638.2Link to Protein Sequence:NP_032664.1Re-query CCDS DB by Nucleotide ID:NM_008638Re-query CCDS DB by Protein ID:NP_032664Link to BLAST:NP_032664.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032664.1 350 P18155 350 100% 0 0

Chromosomal Locations for CCDS 20277.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83306646 83306809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83308933 83309058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83309462 83309554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83310412 83310519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83311210 83311362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83311812 83311934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83313362 83313546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83317429 83317529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGCTTCAGTTTCCTTGTTGTCTGCGTTGGCTGTGCGGTTGTTGCGCCCCACGCACGGCTGCCACCCCC
GCCTACAGCCCTTCCACCTGGCGGCAGTGCGAAATGAAGCCGTTGTCATTTCTGGAAGGAAACTGGCCCA
GCAGATCAAGCAAGAAGTACAGCAGGAGGTGGAAGAGTGGGTGGCCTCAGGCAACAAGCGGCCACACCTC
AGTGTCATTCTGGTTGGTGACAATCCCGCCAGTCACTCCTATGTTCTCAACAAAACCAGGGCAGCAGCTG
AAGTGGGAATCAACAGTGAGACAATTGTGAAACCAGCCTCAGTTTCAGAGGAAGAGCTGCTGAATTCAAT
CAGGAAGCTGAACAACGATGAGAACGTAGATGGCCTCCTTGTTCAGCTGCCACTCCCAGAGCACATTGAT
GAGAGGAAGGTCTGCAATGCCGTTTCTCCTGACAAGGATGTTGATGGCTTTCATGTCATTAACGTGGGGC
GAATGTGCTTGGACCAGTACTCTATGCTGCCAGCAACCCCATGGGGCGTGTGGGAGATAATTAAGCGAAC
AGGCATTCCAACCTTAGGGAAGAATGTGGTAGTGGCTGGCAGGTCAAAAAACGTTGGAATGCCGATTGCA
ATGTTGCTGCACACAGATGGAGCTCACGAACGGCCCGGGGGTGATGCCACAGTCACAATATCTCATCGAT
ACACTCCCAAAGAGCAGCTGAAGAAGCACACGATCCTTGCAGACATTGTAATATCTGCCGCTGGCATTCC
AAATCTGATCACAGCTGACATGATCAAGGAAGGAGCAGCGGTCATCGATGTGGGAATAAACAGAGTTCAA
GATCCTGTCACTGCAAAGCCCAAATTGGTTGGAGATGTGGATTTTGAAGGAGTCAAGAAGAAAGCTGGTT
ATATCACTCCCGTCCCTGGTGGTGTGGGTCCCATGACCGTGGCCATGCTCATGAAGAACACCATTATTGC
CGCAAAGAAAGTGCTAAGACCAGAGGAGCTGGAAGTGTTCAAGTCCAAACAGCGCGGAGTCGCCACCAAC
TAG

Translation (350 aa):
MASVSLLSALAVRLLRPTHGCHPRLQPFHLAAVRNEAVVISGRKLAQQIKQEVQQEVEEWVASGNKRPHL
SVILVGDNPASHSYVLNKTRAAAEVGINSETIVKPASVSEEELLNSIRKLNNDENVDGLLVQLPLPEHID
ERKVCNAVSPDKDVDGFHVINVGRMCLDQYSMLPATPWGVWEIIKRTGIPTLGKNVVVAGRSKNVGMPIA
MLLHTDGAHERPGGDATVTISHRYTPKEQLKKHTILADIVISAAGIPNLITADMIKEGAAVIDVGINRVQ
DPVTAKPKLVGDVDFEGVKKKAGYITPVPGGVGPMTVAMLMKNTIIAAKKVLRPEELEVFKSKQRGVATN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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