NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20245.1 Public Mus musculus 6 Tcf7l1 23 108 98 CCDS HistoryNCBI Gene:21415Re-query CCDS DB by CCDS ID:20245.1Re-query CCDS DB by GeneID:21415See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20245.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069536.11 ENSMUSP00000069403.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069536.11Link to Ensembl Protein Viewer:ENSMUSP00000069403.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000069536Re-query CCDS DB by Protein ID:ENSMUSP00000069403
Original member Current member NCBI NM_009332.3 NP_033358.2 Accepted alive Link to Nucleotide Sequence:NM_009332.3Link to Protein Sequence:NP_033358.2Re-query CCDS DB by Nucleotide ID:NM_009332Re-query CCDS DB by Protein ID:NP_033358Link to BLAST:NP_033358.2

Chromosomal Locations for CCDS 20245.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 72627360 72627793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72629956 72630031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72631012 72631119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72631215 72631374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72631956 72632096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72632927 72633010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72633216 72633318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72634100 72634232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72649120 72649203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72788211 72788338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72788562 72788625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72788710 72788952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1758 nt):
ATGCCCCAGCTCGGTGGTGGCCGCGGTGGCGGCGCCGGCGGGGGAGGCGGTGGCTCCGGAGCCGGGGCAA
CCAGTGGAGGGGACGACCTCGGAGCGAACGACGAGCTGATCCCCTTCCAGGACGAGGGGGGCGAAGAGCA
AGAGCCGAGCAGCGACAGCGCTTCGGCGCAGAGGGATCTGGATGAGGTCAAGTCGTCCCTGGTCAACGAA
TCGGAGAATCAGAGCAGTAGCTCGGACTCCGAGGCGGAGAGGCGCCCGCAGCCCGCCCGGGACGCTTTCC
AGAAGCCGCGCGACTATTTCGCCGAAGTGAGAAGGCCCCAGGATGGCGCTTTTTTTAAGGGACCTGCGTA
TCCTGGGTACCCCTTCCTGATGATTCCAGACCTGAGCAGCCCGTACCTCTCCAACGGACCCCTGTCTCCT
GGTGGAGCGCGCACCTACCTACAGATGAAATGGCCCCTCCTCGATGTCCCCTCCAGTGCTACAGTCAAGG
ACACAAGGTCGCCATCTCCAGCACACTTGTCCAACAAAGTTCCTGTTGTTCAGCACCCTCATCACATGCA
CCCGCTGACACCTCTCATCACCTACAGCAACGACCACTTCTCCCCTGCGTCCCCTCCCACGCATCTGTCC
CCAGAGATCGACCCAAAGACAGGAATCCCCCGGCCCCCTCATCCATCTGAGCTGTCACCGTATTACCCAC
TGTCTCCAGGAGCTGTCGGACAAATCCCCCATCCCCTCGGCTGGCTCGTCCCACAGCAAGGGCAGCCCAT
GTACTCTCTCCCTCCGGGTGGTTTCCGGCATCCTTACCCTGCCCTCGCCATGAACGCTTCAATGTCCAGC
CTGGTCTCAAGCCGGTTCCCACACATGGTGGCTCCTGCCCATCCTGGTCTGCCCACCTCAGGAATCCCCC
ACCCTGCCATCGTCTCCCCCATTGTGAAGCAGGAGCCAGCAGCCCCCAGCCTGAGCCCTGCAGTGAGTGC
GAAATCCCCAGTTACGGTGAAGAAGGAAGAGGAGAAGAAACCTCACGTGAAAAAGCCCCTGAATGCCTTC
ATGTTGTATATGAAGGAGATGAGGGCCAAGGTGGTGGCCGAGTGTACCCTGAAGGAAAGTGCAGCCATTA
ACCAAATCCTGGGAAGAAAGTGGCACAACCTGTCAAGAGAAGAACAGGCCAAATACTATGAGCTTGCCCG
GAAAGAACGGCAGCTTCACGCGCAGCTCTACCCAACCTGGTCAGCCCGGGACAACTATGGGAAGAAGAAG
AAGAGGAAGAGAGAAAAGCAGCTGTCACAGACACAGTCTCAGCAGCAAATCCAAGAGGCAGAGGGTGCTC
TGGCCTCTAAGAGCAAGAAGCCATGCATTCAGTACCTGCCCCCTGAGAAGCCTTGTGATAGCCCTGCGTC
TTCCCATGGCAGCACGCTGGACTCCCCTGCGACGCCCTCCGCAGCCTTGGCCTCACCAGCTGCCCCTGCG
GCTACCCACTCCGAGCAAGCGCAGCCCCTGTCGCTCACCACCAAACCGGAGGCCCGGGCCCAGCTGGCTC
TCCACTCCGCTGCCTTCCTGTCGGCTAAGGCGGCCGCCAGCAACTCCAGCCAGATGGGCAGCCAGCCCCC
ACTCCTATCCAGGCCCTTGCCCTTGGGCTCTATGCCCGCCGCTCTGCTGACCTCTCCCCCTACTTTCCCA
GCTACGCTCCATGCCCACCAGGCCCTCCCCGTGCTACAGGCCCAGCCTCTTTCCTTGGTCACCAAGTCTG
CCCACTAA

Translation (585 aa):
MPQLGGGRGGGAGGGGGGSGAGATSGGDDLGANDELIPFQDEGGEEQEPSSDSASAQRDLDEVKSSLVNE
SENQSSSSDSEAERRPQPARDAFQKPRDYFAEVRRPQDGAFFKGPAYPGYPFLMIPDLSSPYLSNGPLSP
GGARTYLQMKWPLLDVPSSATVKDTRSPSPAHLSNKVPVVQHPHHMHPLTPLITYSNDHFSPASPPTHLS
PEIDPKTGIPRPPHPSELSPYYPLSPGAVGQIPHPLGWLVPQQGQPMYSLPPGGFRHPYPALAMNASMSS
LVSSRFPHMVAPAHPGLPTSGIPHPAIVSPIVKQEPAAPSLSPAVSAKSPVTVKKEEEKKPHVKKPLNAF
MLYMKEMRAKVVAECTLKESAAINQILGRKWHNLSREEQAKYYELARKERQLHAQLYPTWSARDNYGKKK
KRKREKQLSQTQSQQQIQEAEGALASKSKKPCIQYLPPEKPCDSPASSHGSTLDSPATPSAALASPAAPA
ATHSEQAQPLSLTTKPEARAQLALHSAAFLSAKAAASNSSQMGSQPPLLSRPLPLGSMPAALLTSPPTFP
ATLHAHQALPVLQAQPLSLVTKSAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH