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Report for CCDS20203.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20203.1 Public Mus musculus 6 Atoh1 10 38.1 68 CCDS HistoryNCBI Gene:11921Re-query CCDS DB by CCDS ID:20203.1Re-query CCDS DB by GeneID:11921

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Sequence IDs included in CCDS 20203.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000101351 ENSMUSP00000098903 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101351Link to Ensembl Protein Viewer:ENSMUSP00000098903Re-query CCDS DB by Nucleotide ID:ENSMUST00000101351Re-query CCDS DB by Protein ID:ENSMUSP00000098903
Original member Current member NCBI NM_007500.4 NP_031526.1 Accepted alive Link to Nucleotide Sequence:NM_007500.4Link to Protein Sequence:NP_031526.1Re-query CCDS DB by Nucleotide ID:NM_007500Re-query CCDS DB by Protein ID:NP_031526Link to BLink:NP_031526.1

Chromosomal Locations for CCDS 20203.1

Assembly GRCm38 (GCF_000001635.20)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 6Link to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

Chromosome Start Stop Links
6 64729323 64730378 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternate exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGTCCCGCCTGCTGCATGCAGAAGAGTGGGCTGAGGTAAAAGAGTTGGGGGACCACCATCGCCATCCCC
AGCCGCACCACGTCCCGCCGCTGACGCCACAGCCACCTGCTACCCTGCAGGCGAGAGACCTTCCCGTCTA
CCCGGCAGAACTGTCCCTCCTGGATAGCACCGACCCACGCGCCTGGCTGACTCCCACTTTGCAGGGCCTC
TGCACGGCACGCGCCGCCCAGTATCTGCTGCATTCTCCCGAGCTGGGTGCCTCCGAGGCCGCGGCGCCCC
GGGACGAGGCTGACAGCCAGGGTGAGCTGGTAAGGAGAAGCGGCTGTGGCGGCCTCAGCAAGAGCCCCGG
GCCCGTCAAAGTACGGGAACAGCTGTGCAAGCTGAAGGGTGGGGTTGTAGTGGACGAGCTTGGCTGCAGC
CGCCAGCGAGCCCCTTCCAGCAAACAGGTGAATGGGGTACAGAAGCAAAGGAGGCTGGCAGCAAACGCAA
GGGAACGGCGCAGGATGCACGGGCTGAACCACGCCTTCGACCAGCTGCGCAACGTTATCCCGTCCTTCAA
CAACGACAAGAAGCTGTCCAAATATGAGACCCTACAGATGGCCCAGATCTACATCAACGCTCTGTCGGAG
TTGCTGCAGACTCCCAATGTCGGAGAGCAACCGCCGCCGCCCACAGCTTCCTGCAAAAATGACCACCATC
ACCTTCGCACCGCCTCCTCCTATGAAGGAGGTGCGGGCGCCTCTGCGGTAGCTGGGGCTCAGCCAGCCCC
GGGAGGGGGCCCGAGACCTACCCCGCCCGGGCCTTGCCGGACTCGCTTCTCAGGCCCAGCTTCCTCTGGG
GGTTACTCGGTGCAGCTGGACGCTTTGCACTTCCCAGCCTTCGAGGACAGGGCCCTAACAGCGATGATGG
CACAGAAGGACCTGTCGCCTTCGCTGCCCGGGGGCATCCTGCAGCCTGTACAGGAGGACAACAGCAAAAC
ATCTCCCAGATCCCACAGAAGTGACGGAGAGTTTTCCCCCCACTCTCATTACAGTGACTCTGATGAGGCC
AGTTAG

Translation (351 aa):
MSRLLHAEEWAEVKELGDHHRHPQPHHVPPLTPQPPATLQARDLPVYPAELSLLDSTDPRAWLTPTLQGL
CTARAAQYLLHSPELGASEAAAPRDEADSQGELVRRSGCGGLSKSPGPVKVREQLCKLKGGVVVDELGCS
RQRAPSSKQVNGVQKQRRLAANARERRRMHGLNHAFDQLRNVIPSFNNDKKLSKYETLQMAQIYINALSE
LLQTPNVGEQPPPPTASCKNDHHHLRTASSYEGGAGASAVAGAQPAPGGGPRPTPPGPCRTRFSGPASSG
GYSVQLDALHFPAFEDRALTAMMAQKDLSPSLPGGILQPVQEDNSKTSPRSHRSDGEFSPHSHYSDSDEA
S


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Map Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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