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Report for CCDS19695.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19695.1 Public Mus musculus 5 Mmp17 16 104 75 CCDS HistoryNCBI Gene:23948Re-query CCDS DB by CCDS ID:19695.1Re-query CCDS DB by GeneID:23948

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Sequence IDs included in CCDS 19695.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000031390 ENSMUSP00000031390 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031390Link to Ensembl Protein Viewer:ENSMUSP00000031390Re-query CCDS DB by Nucleotide ID:ENSMUST00000031390Re-query CCDS DB by Protein ID:ENSMUSP00000031390
Original member Current member EBI,WTSI OTTMUST00000111796 OTTMUSP00000062676 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000111796Link to Vega Protein Viewer:OTTMUSP00000062676Re-query CCDS DB by Nucleotide ID:OTTMUST00000111796Re-query CCDS DB by Protein ID:OTTMUSP00000062676
Original member Current member NCBI NM_011846.4 NP_035976.3 Accepted alive Link to Nucleotide Sequence:NM_011846.4Link to Protein Sequence:NP_035976.3Re-query CCDS DB by Nucleotide ID:NM_011846Re-query CCDS DB by Protein ID:NP_035976Link to BLink:NP_035976.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035976.3 578 Q9R0S3 578 100% 0 0

Chromosomal Locations for CCDS 19695.1

Assembly GRCm38.p2 (GCF_000001635.22)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 5Link to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5

Chromosome Start Stop Links
5 129584293 129584448 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 129594544 129594676 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 129594954 129595083 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 129595405 129595688 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 129596562 129596738 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 129598659 129598758 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 129601933 129602015 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 129602102 129602254 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 129605515 129605772 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5
5 129606276 129606538 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5Link to Vega Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternate exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGGGACGCCGCCCGCGGGGACCTGGGTCCCCCCGGGGACCTGGCCCTCCACGCCCCGGGCCGGGGCTGC
CA
CCACTGCTGCTTGTACTGGCGCTGGCGGCCCATGGGGGCTGCGCAGCGCCCGCGCCCCGCGCGGAGGA
C
CTCAGCCTCGGGGTGGAGTGGCTAAGCAGGTTTGGCTACCTGCCGCCTGCAGATCCGGCATCAGGGCAG
CTA
CAGACCCAGGAGGAACTGTCCAAAGCGATTACTGCCATGCAGCAGTTTGGTGGTCTGGAGACCACTG
GC
ATCCTAGATGAGGCCACTCTGGCCCTGATGAAAACCCCTCGATGCTCCCTTCCGGACCTGCCCCCTGG
G
GCCCAATCGAGAAGGAAGCGGCAGACTCCACCCCCAACCAAATGGAGCAAGAGGAACCTTTCTTGGAGG
GTC
CGGACATTCCCACGGGACTCACCCCTGGGCCGGGATACTGTGCGTGCACTCATGTACTACGCCCTCA
AA
GTCTGGAGTGACATCACACCCTTGAACTTCCACGAGGTAGCGGGCAACGCGGCGGACATCCAGATCGA
C
TTCTCCAAGGCCGACCACAATGACGGCTACCCCTTCGATGGCCCTGGTGGCACGGTGGCCCACGCATTC
TTC
CCTGGTGACCACCACACGGCAGGGGACACCCACTTTGATGACGATGAGCCATGGACCTTCCGTTCCT
CA
GATGCCCACGGGATGGACCTGTTTGCAGTGGCCGTCCATGAGTTTGGTCATGCCATTGGTCTGAGCCA
T
GTTGCCGCCCCAAGCTCCATCATGCAACCGTACTACCAGGGCCCCGTGGGTGACCCGCTACGCTATGGA
CTT
CCCTATGAGGACAGGGTGCGTGTCTGGCAGTTGTACGGTGTGCGGGAATCCGTGTCCCCTACTGCCC
AG
CTGGATACCCCAGAGCCCGAGGAGCCACCCCTCCTGCCAGAGCCCCCCAACAATCGGTCTAGCACTCC
G
CCCCAGAAGGACGTGCCTCACAGGTGCACTGCCCACTTTGATGCTGTGGCCCAGATTCGAGGCGAAGCA
TTC
TTTTTCAAAGGCAAGTATTTCTGGAGGCTGACCCGGGACCGACACTTGGTGTCGCTGCAGCCGGCTC
AA
ATGCATCGCTTCTGGCGGGGCCTGCCGCTGCACCTGGACAGTGTGGACGCCGTGTATGAGCGTACCAG
T
GACCACAAGATTGTCTTCTTCAAAGGAGACAGATACTGGGTGTTTAAGGACAACAACGTAGAGGAAGGG
TAC
CCGCGACCTGTCTCCGACTTCAGCCTCCCGCCAGGTGGCATCGATGCTGTCTTCTCCTGGGCCCACA
AT
GACAGGACTTATTTCTTTAAGGACCAGCTGTACTGGCGCTATGATGACCACACACGGCGCATGGACCC
T
GGCTACCCTGCCCAGGGACCCCTGTGGAGAGGTGTCCCCAGCATGTTGGATGATGCCATGCGCTGGTCT
GAT
GGTGCATCCTATTTCTTCCGAGGCCAGGAGTACTGGAAAGTGCTGGATGGCGAGCTGGAAGCAGCCC
CC
GGGTACCCACAGTCTACAGCCCGCGACTGGCTGGTATGCGGTGAGCCGCTGGCGGATGCGGAGGATGT
A
GGGCCTGGACCCCAGGGCCGCAGTGGGGCCCAAGATGGTCTGGCAGTATGTTCCTGCACTTCAGACGCA
CAC
AGGTTGGCACTGCCATCTCTGCTGCTTCTGACTCCACTGCTGTGGGGCCTGTGA


Translation (578 aa):
MGRRPRGPGSPRGPGPPRPGPGLPPLLLVLALAAHGGCAAPAPRAEDLSLGVEWLSRFGYLPPADPASGQ
L
QTQEELSKAITAMQQFGGLETTGIL
DEATLALMKTPRCSLPDLPPGAQSRRKRQTPPPTKWSKRNLSWR
V
RTFPRDSPLGRDTVRALMYYALKVWSDITPLNFHEVAGNAADIQIDFSKADHNDGYPFDGPGGTVAHAF
F
PGDHHTAGDTHFDDDEPWTFRSS
DAHGMDLFAVAVHEFGHAIGLSHVAAPSSIMQPYYQGPVGDPLRYG
L
PYEDRVRVWQLY
GVRESVSPTAQLDTPEPEEPPLLPEPPNNRSSTPPQKDVPHRCTAHFDAVAQIRGEA
F
FFK
GKYFWRLTRDRHLVSLQPAQMHRFWRGLPLHLDSVDAVYERTSDHKIVFFKGDRYWVFKDNNVEEG
Y
PRPVSDFSLPPGGIDAVFSWAHNDRTYFFKDQLYWRYDDHTRRMDPGYPAQGPLWRGVPSMLDDAMRWS
D
GASYFFRGQEYWKVLDGELEAAPGYPQSTARDWLVCGEPLADAEDVGPGPQGRSGAQDGLAVCSCTSDA
H
RLALPSLLLLTPLLWGL




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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