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Report for CCDS18539.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18539.1 Public Mus musculus 4 B4galt2 23 108 98 CCDS HistoryNCBI Gene:53418Re-query CCDS DB by CCDS ID:18539.1Re-query CCDS DB by GeneID:53418See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18539.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030266.11 ENSMUSP00000030266.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030266.11Link to Ensembl Protein Viewer:ENSMUSP00000030266.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030266Re-query CCDS DB by Protein ID:ENSMUSP00000030266
Original member Current member EBI ENSMUST00000084325.9 ENSMUSP00000081352.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084325.9Link to Ensembl Protein Viewer:ENSMUSP00000081352.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000084325Re-query CCDS DB by Protein ID:ENSMUSP00000081352
Original member Current member EBI ENSMUST00000106421.8 ENSMUSP00000102029.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106421.8Link to Ensembl Protein Viewer:ENSMUSP00000102029.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106421Re-query CCDS DB by Protein ID:ENSMUSP00000102029
Original member NCBI NM_001253381.1 NP_001240310.1 Updated not alive Link to Nucleotide Sequence:NM_001253381.1Link to Protein Sequence:NP_001240310.1Re-query CCDS DB by Nucleotide ID:NM_001253381Re-query CCDS DB by Protein ID:NP_001240310
Current member NCBI NM_001253381.2 NP_001240310.1 Accepted alive Link to Nucleotide Sequence:NM_001253381.2Link to Protein Sequence:NP_001240310.1Re-query CCDS DB by Nucleotide ID:NM_001253381Re-query CCDS DB by Protein ID:NP_001240310Link to BLAST:NP_001240310.1
Original member NCBI NM_017377.5 NP_059073.1 Updated not alive Link to Nucleotide Sequence:NM_017377.5Link to Protein Sequence:NP_059073.1Re-query CCDS DB by Nucleotide ID:NM_017377Re-query CCDS DB by Protein ID:NP_059073
Current member NCBI NM_017377.6 NP_059073.1 Accepted alive Link to Nucleotide Sequence:NM_017377.6Link to Protein Sequence:NP_059073.1Re-query CCDS DB by Nucleotide ID:NM_017377Re-query CCDS DB by Protein ID:NP_059073Link to BLAST:NP_059073.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240310.1 369 Q9Z2Y2 369 100% 0 0
NP_059073.1 369 Q9Z2Y2 369 100% 0 0

Chromosomal Locations for CCDS 18539.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 117873853 117874003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117876880 117876984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117877097 117877219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117877439 117877629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117880868 117881103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117881315 117881618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGAGCAGACTGCTGGGGGGGACGCTGGAGCGGGTCTGCAAGGCTGTGCTCCTTCTCTGCCTGCTGCACT
TCCTTGTGGCCGTCATCCTCTACTTTGACGTCTATGCCCAGCACCTGGCCTTTTTCAGCCGCTTCAGTAC
CCGAAGCCCAGCCCATGCCCTCTACCCTGCAGCCAGCAGCAGTACCAACTGCTCTCGGCCCAACGCCACT
GCCGCTAGCTCCGGGCTGCCTGAAGTGCCCAGTGCCAGGCCTGGTCCCACAGCTCCAGTCATTCCGCCCT
GTCCTGACGTGCCGCCTGGTCTTGTGGGCCGAGTGGTCATCGAATTCACCTCACCCATGCCTCTGGAACG
GGTGCAGAGGGAAAATCCAGGCGTGCTCCTGGGCGGCCGCTATTCTCCACCCGACTGCACCCCAGCCCAA
ACGGTGGCAGTCATCATCCCCTTTAGACACCGGGAGCACCACCTACGCTATTGGCTCCACTATCTGCACC
CCATGTTGAGGCGGCAGCGGCTGCGCTACGGTGTCTATGTCATCAACCAGCATGGCGAGGAGACCTTCAA
CCGAGCCAAGCTGCTCAACGTGGGCTTCCTAGAGGCACTGAAGGAGGATGCTGCCTATGACTGCTTCATC
TTCAGTGATGTGGACCTGGTCCCTATGGATGACCGCAATCTGTACCGTTGTGGTGACCAGCCCCGCCACT
TTGCCATCGCCATGGACAAGTTTGGCTTCCGGTTGCCCTATGCTAGCTACTTTGGAGGTGTGTCGGGCCT
GAGCAAGGCCCAGTTTCTGAGGATCAATGGCTTTCCCAACGAGTACTGGGGCTGGGGTGGCGAGGATGAT
GACATCTTCAACCGGATCTCCCTGACTGGGATGAAGATCTCACGCCCGGATGTCCGGATTGGCCGCTACC
GCATGATCAAGCACGACCGGGACAAACATAACGAGCCCAACCCTCAGAGGTTTAATAAGATTCAAAACAC
AAAGATGAGCATGAAGTGGGACGGCATTGGATCCGTGCGGTACCGAGTCTTGGAAGTGTCTCGGCAACCG
CTCTTCACCAACATCACAGTGGACATTGGACAGCCCATGTCGTGGCTCACTCAAGGCTGA

Translation (369 aa):
MSRLLGGTLERVCKAVLLLCLLHFLVAVILYFDVYAQHLAFFSRFSTRSPAHALYPAASSSTNCSRPNAT
AASSGLPEVPSARPGPTAPVIPPCPDVPPGLVGRVVIEFTSPMPLERVQRENPGVLLGGRYSPPDCTPAQ
TVAVIIPFRHREHHLRYWLHYLHPMLRRQRLRYGVYVINQHGEETFNRAKLLNVGFLEALKEDAAYDCFI
FSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRLPYASYFGGVSGLSKAQFLRINGFPNEYWGWGGEDD
DIFNRISLTGMKISRPDVRIGRYRMIKHDRDKHNEPNPQRFNKIQNTKMSMKWDGIGSVRYRVLEVSRQP
LFTNITVDIGQPMSWLTQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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