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Report for CCDS18530.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18530.1 Public Mus musculus 4 Rps8 23 108 98 CCDS HistoryNCBI Gene:20116Re-query CCDS DB by CCDS ID:18530.1Re-query CCDS DB by GeneID:20116See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18530.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102696.4 ENSMUSP00000099757.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102696.4Link to Ensembl Protein Viewer:ENSMUSP00000099757.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102696Re-query CCDS DB by Protein ID:ENSMUSP00000099757
Original member Current member NCBI NM_009098.2 NP_033124.1 Accepted alive Link to Nucleotide Sequence:NM_009098.2Link to Protein Sequence:NP_033124.1Re-query CCDS DB by Nucleotide ID:NM_009098Re-query CCDS DB by Protein ID:NP_033124Link to BLAST:NP_033124.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033124.1 208 P62242 208 100% 0 0

Chromosomal Locations for CCDS 18530.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 117153878 117153987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117154299 117154428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117154638 117154813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117155008 117155107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117155571 117155677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117156058 117156061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGGGCATCTCTCGGGACAACTGGCACAAGCGCCGCAAGACCGGGGGTAAGCGAAAACCCTACCACAAGA
AGCGAAAGTATGAGCTGGGACGGCCCGCTGCCAACACGAAGATTGGCCCTCGCCGCATACACACAGTCCG
AGTTCGAGGAGGCAATAAGAAGTACCGTGCCCTGAGATTGGATGTGGGGAACTTTTCCTGGGGCTCTGAG
TGTTGTACTCGCAAAACAAGGATCATTGATGTTGTCTACAATGCATCCAACAACGAGCTTGTCCGCACCA
AGACCCTGGTGAAGAACTGCATCGTGCTTATTGACAGCACGCCGTACCGACAGTGGTACGAGTCCCACTA
TGCACTGCCCCTGGGCCGCAAGAAGGGGGCCAAGCTGACTCCTGAGGAGGAAGAGATTTTAAACAAAAAA
CGATCAAAGAAAATTCAAAAGAAATACGATGAAAGGAAAAAGAATGCCAAAATCAGCAGCCTCCTGGAGG
AGCAGTTCCAGCAGGGCAAGCTTCTAGCCTGTATTGCCTCACGACCAGGCCAGTGTGGCAGAGCAGACGG
CTATGTGCTCGAAGGCAAGGAGCTGGAGTTCTATCTGCGGAAGATCAAAGCCCGGAAAGGCAAATGA

Translation (208 aa):
MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSE
CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKK
RSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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