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Report for CCDS18521.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18521.1 Public Mus musculus 4 Urod 23 108 98 CCDS HistoryNCBI Gene:22275Re-query CCDS DB by CCDS ID:18521.1Re-query CCDS DB by GeneID:22275See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18521.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030446.14 ENSMUSP00000030446.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030446.14Link to Ensembl Protein Viewer:ENSMUSP00000030446.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030446Re-query CCDS DB by Protein ID:ENSMUSP00000030446
Original member NCBI NM_009478.4 NP_033504.2 Updated not alive Link to Nucleotide Sequence:NM_009478.4Link to Protein Sequence:NP_033504.2Re-query CCDS DB by Nucleotide ID:NM_009478Re-query CCDS DB by Protein ID:NP_033504
Current member NCBI NM_009478.5 NP_033504.2 Accepted alive Link to Nucleotide Sequence:NM_009478.5Link to Protein Sequence:NP_033504.2Re-query CCDS DB by Nucleotide ID:NM_009478Re-query CCDS DB by Protein ID:NP_033504Link to BLAST:NP_033504.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033504.2 367 P70697 367 100% 0 0

Chromosomal Locations for CCDS 18521.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 116990287 116990448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116991232 116991298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116991393 116991493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116991621 116991758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116992564 116992725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116992826 116993023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116993248 116993310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116993388 116993467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116993585 116993697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116994331 116994350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGGAGGCGAACGGGTTCGGACTCCAGAATTTCCCGGAGCTGAAGAATGACACGTTCCTGAGAGCAGCCT
GG
GGAGAGGAAACAGACTATACTCCCGTTTGGTGCATGAGACAGGCAGGCCGCTACTTACCAGAGTTTAG
G
GAAACCAGGGCTGCCCAGGACTTCTTCAGCACCTGCCGATCTCCCGAGGCTTGCTGTGAACTGACTCTA
CAG
CCACTACGAAGGTTTCCTCTGGATGCTGCCATAATTTTCTCTGACATCCTTGTTGTACCCCAGGCAT
TG
GGCATGGAGGTGACCATGGTACCTGGCAAAGGACCCAGCTTTCCAGAGCCATTAAGAGAAGAGCGGGA
C
TTAGAGCGTCTACGGGATCCAGCAGCAGCGGCTTCAGAGTTAGGCTATGTGTTCCAAGCCATCACCCTT
ACT
CGACAACGGCTGGCCGGACGTGTGCCACTAATTGGCTTTGCTGGTGCTCCGTGGACCCTAATGACAT
AC
ATGGTTGAAGGCGGCAGTTCAAGCACCATGGCTCAGGCCAAACGATGGCTCTACCAAAGGCCACAGGC
C
AGTCACAAGCTGCTTGGCATACTCACTGATGTTCTGGTCCCATACCTAATAGGACAAGTGGCTGCTGGT
GCT
CAGGCATTGCAGCTCTTTGAGTCCCACGCAGGACATCTTGGCACCGAGCTCTTCAGCAAGTTTGCAC
TG
CCCTACATTCGTGATGTGGCCAAGCGAGTGAAGGCTGGGTTGCAGAAGGCAGGCCTGGCACCAGTGCC
C
ATGATCATCTTTGCTAAGGATGGACATTTTGCCCTGGAAGAGCTGGCCCAGGCTGGCTATGAGGTAGTT
GGA
CTTGACTGGACAGTGGCTCCAAAGAAAGCCCGGGAACGTGTCGGGAAGGCAGTGACCCTGCAGGGGA
AC
CTGGATCCCTGTGCCTTGTATGCATCTGAGGAAGAGATCGGTCGGCTGGTGCAGCAAATGCTGGATGA
C
TTTGGGCCTCAACGCTACATTGCCAACCTAGGGCATGGGCTTTACCCTGACATGGACCCAGAACGTGTA
GGA
GCCTTTGTGGATGCTGTACACAAACATTCACGCCTGCTTCGACAGAATTGA


Translation (367 aa):
MEANGFGLQNFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTL
Q
PLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREERDLERLRDPAAAASELGYVFQAITL
T
RQRLAGRVPLIGFAGAP
WTLMTYMVEGGSSSTMAQAKRWLYQRPQASHKLLGILTDVLVPYLIGQVAAG
A
Q
ALQLFESHAGHLGTELFSKFALPYIRDVAKRVKAGLQKAGLAPVPMIIFAKDGHFALEELAQAGYEVV
G
LDWTVAPKKA
RERVGKAVTLQGNLDPCALYASEEEIGRLVQQMLDDFGPQRYIANLGHGLYPDMDPERV
G
AFVDAVHKHSRLLRQN




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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