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Report for CCDS18096.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18096.1 Public Mus musculus 4 Sit1 23 108 98 CCDS HistoryNCBI Gene:54390Re-query CCDS DB by CCDS ID:18096.1Re-query CCDS DB by GeneID:54390See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18096.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030180.6 ENSMUSP00000030180.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030180.6Link to Ensembl Protein Viewer:ENSMUSP00000030180.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030180Re-query CCDS DB by Protein ID:ENSMUSP00000030180
Original member Current member NCBI NM_019436.3 NP_062309.2 Accepted alive Link to Nucleotide Sequence:NM_019436.3Link to Protein Sequence:NP_062309.2Re-query CCDS DB by Nucleotide ID:NM_019436Re-query CCDS DB by Protein ID:NP_062309Link to BLAST:NP_062309.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062309.2 180 Q8C503 180 100% 0 0

Chromosomal Locations for CCDS 18096.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43482615 43482848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43482939 43483003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43483130 43483188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43483278 43483416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43483538 43483583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGAGCAGAGATTACAACTGTACCACTGACGATCAACTCGCATGGGGGATCCCCTCCATAAGCCACGCGT
GGGGACTGTGGGCCCTCTTAGGAGTTGTGACGGTGCTGCTTCTCATCTCATTGGCTGCACTCTTGTCCCA
GTGGACCCGTGGTCGGAGAAGGAACCAGGAGGGACAGGGACCACTCTCCGGAAGGTCCGCGGAAGAAGTT
CCCCTGTATGGCAACCTGCACTATTTACAGACAGGTCGGCTGTCTCAAGAACCAAGGTCAGAAGAGCAGG
ACCCACCATCCTCTGGAGGCCTTGCCAGGGGGGCGGAGGAGGCCATGTGCTACACTAGCCTGCAGCTGCG
ACCAGCTCAAGGTCGGATCCCCAGCTCTGGAAACCCCATCAAGTACTGTGAGGTGGTGCTGGACTCTGAG
CCAAAGCCCCAGGCCCCAGGCCCTGAGCCGGAACTTTATGCCTCCGTGTGTGCCCAGACCCGCAGAGGCC
GGGCTTCCTTCCCAGATCAAGCCTATGCCAACAGCCAGCCTGCACCCAGCTGA

Translation (180 aa):
MSRDYNCTTDDQLAWGIPSISHAWGLWALLGVVTVLLLISLAALLSQWTRGRRRNQEGQGPLSGRSAEEV
PLYGNLHYLQTGRLSQEPRSEEQDPPSSGGLARGAEEAMCYTSLQLRPAQGRIPSSGNPIKYCEVVLDSE
PKPQAPGPEPELYASVCAQTRRGRASFPDQAYANSQPAPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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