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Report for CCDS17879.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17879.1 Public Mus musculus 3 Gbp3 23 108 98 CCDS HistoryNCBI Gene:55932Re-query CCDS DB by CCDS ID:17879.1Re-query CCDS DB by GeneID:55932See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17879.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029935.13 ENSMUSP00000029935.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029935.13Link to Ensembl Protein Viewer:ENSMUSP00000029935.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029935Re-query CCDS DB by Protein ID:ENSMUSP00000029935
Original member Current member EBI ENSMUST00000106221.7 ENSMUSP00000101828.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106221.7Link to Ensembl Protein Viewer:ENSMUSP00000101828.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106221Re-query CCDS DB by Protein ID:ENSMUSP00000101828
Original member Current member EBI ENSMUST00000106222.8 ENSMUSP00000101829.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106222.8Link to Ensembl Protein Viewer:ENSMUSP00000101829.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106222Re-query CCDS DB by Protein ID:ENSMUSP00000101829
Original member Current member NCBI NM_001289492.3 NP_001276421.1 Accepted alive Link to Nucleotide Sequence:NM_001289492.3Link to Protein Sequence:NP_001276421.1Re-query CCDS DB by Nucleotide ID:NM_001289492Re-query CCDS DB by Protein ID:NP_001276421Link to BLAST:NP_001276421.1
Original member Current member NCBI NM_001289493.2 NP_001276422.1 Accepted alive Link to Nucleotide Sequence:NM_001289493.2Link to Protein Sequence:NP_001276422.1Re-query CCDS DB by Nucleotide ID:NM_001289493Re-query CCDS DB by Protein ID:NP_001276422Link to BLAST:NP_001276422.1
Original member Current member NCBI NM_001355403.2 NP_001342332.1 Accepted alive Link to Nucleotide Sequence:NM_001355403.2Link to Protein Sequence:NP_001342332.1Re-query CCDS DB by Nucleotide ID:NM_001355403Re-query CCDS DB by Protein ID:NP_001342332Link to BLAST:NP_001342332.1
Original member Current member NCBI NM_018734.4 NP_061204.3 Accepted alive Link to Nucleotide Sequence:NM_018734.4Link to Protein Sequence:NP_061204.3Re-query CCDS DB by Nucleotide ID:NM_018734Re-query CCDS DB by Protein ID:NP_061204Link to BLAST:NP_061204.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276421.1 620 Q61107 620 100% 0 0
NP_001276422.1 620 Q61107 620 100% 0 0
NP_001342332.1 620 Q61107 620 100% 0 0
NP_061204.3 620 Q61107 620 100% 0 0

Chromosomal Locations for CCDS 17879.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 142561764 142561935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142564106 142564233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142564948 142565057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142565247 142565443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142566346 142566591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142567547 142567827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142569048 142569260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142570492 142570594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142570893 142571086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142572474 142572692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1863 nt):
ATGGAGGCACCCATTTGTCTGGTGGAAAATTGGAAAAATCAGCTGACAGTAAATCTGGAAGCCATAAGGA
TTCTTGAGCAGATAGCACAGCCTCTGGTGGTGGTGGCCATTGTTGGTTTATATCGTACAGGGAAGTCCTA
CCTCATGAATCGTCTTGCAGGACGGAACCATGGCTTCTCCTTGGGCTCCACAGTGCAATCCGAAACCAAG
GGTATCTGGATGTGGTGTGTGCCCCATCCCACCAAGCCAACACACACCCTGGTCCTTTTGGACACTGAAG
GCCTTGGTGATGTAGAAAAGGGTGACCCTAAGAATGACTCGTGGATCTTCGCCCTGGCTGTGCTTCTGAG
CAGCACCTTTGTCTACAACAGCATGAGCACCATCAACCAGCAGGCCCTGGAGCAGCTGCATTTTGTGACT
GAATTAACACAGCTAATCCGGGCAAAATCGAGCCCCAGAGAGGACAAAGTGAAGGACTCCAGTGAGTTTG
TAGGTTTCTTCCCAGACTTTATCTGGGCTGTTCGAGATTTTGCTCTGGAGCTGAAGTTAAATGGTCGGCC
CATCACAGAAGATGAGTACCTGGAGAATGCCCTGAAGCTGATCCAAGGAGACAATCTCAAAGTCCAACAG
TCCAACATGACCAGAGAATGTATCAGATATTTTTTTCCGGTACGGAAGTGCTTTGTCTTTGACAGGCCCA
CAAGCGACAAACGTTTATTGCTCCAAATTGAAAATGTTCCAGAAAACCAACTGGAACGGAATTTCCAGGT
TGAATCAGAAAAATTCTGTTCCTACATCTTCACCAACGGCAAGACCAAGACTCTGAGAGGGGGAGTCATT
GTCACAGGAAATCGGCTGGGGACTTTGGTGCAGACCTATGTGAATGCCATCAACAGTGGGACTGTGCCTT
GTCTGGAGAACGCAGTGACAACCCTGGCCCAGCGTGAGAACTCCATAGCTGTGCAGAAGGCAGCTGACCA
CTACAGTGAGCAGATGGCCCAGCGAATGAGGCTCCCCACAGACACGCTCCAGGAGCTGCTGACTGTGCAT
GCAGCCTGTGAGAAGGAAGCCATTGCTGTCTTCATGGAGCACTCCTTCAAGGATGATGAGCAGGAGTTCC
AGAAGAAGCTGGTGGTCACCATAGAGGAAAGGAAGGAAGAGTTCATACGACAGAACGAAGCAGCATCTAT
TCGTCACTGCCAGGCTGAACTGGAGAGGCTTTCAGAGTCCCTGAGGAAGAGCATCTCCTGTGGAGCTTTC
TCTGTTCCTGGGGGTCACAGCCTCTACTTAGAAGCCAGGAAGAAGATTGAGCTGGGCTACCAGCAAGTGC
TGAGGAAGGGAGTGAAGGCAAAAGAGGTTCTCAAGAGTTTCCTACAGTCACAGGCTATTATGGAGGACTC
TATCTTGCAGTCAGACAAAGCTCTTACAGATGGAGAGAGAGCCATAGCAGCTGAGCGGACAAAGAAGGAA
GTGGCTGAGAAGGAACTAGAGCTGCTGAGGCAGAGACAGAAGGAGCAAGAGCAAGTGATGGAGGCTCAGG
AGAGAAGCTTCCGAGAAAACATTGCTAAACTTCAGGAGAAGATGGAGAGCGAAAAGGAGATGCTGCTGAG
GGAGCAGGAGAAGATGCTGGAGCACAAGCTGAAGGTCCAAGAAGAACTGCTTATTGAAGGATTCAGAGAG
AAATCTGATATGTTAAAGAATGAAATAAGTCACCTGAGAGAAGAGATGGAAAGAACAAGAAGGAAACCCT
CACTGTTTGGTCAAATCCTTGACACCATTGGCAATGCGTTCATTATGATTTTACCAGGAGCTGGTAAACT
ATTTGGTGTGGGGCTGAAATTCCTCGGCTCACTAAGTAGTTAG

Translation (620 aa):
MEAPICLVENWKNQLTVNLEAIRILEQIAQPLVVVAIVGLYRTGKSYLMNRLAGRNHGFSLGSTVQSETK
GIWMWCVPHPTKPTHTLVLLDTEGLGDVEKGDPKNDSWIFALAVLLSSTFVYNSMSTINQQALEQLHFVT
ELTQLIRAKSSPREDKVKDSSEFVGFFPDFIWAVRDFALELKLNGRPITEDEYLENALKLIQGDNLKVQQ
SNMTRECIRYFFPVRKCFVFDRPTSDKRLLLQIENVPENQLERNFQVESEKFCSYIFTNGKTKTLRGGVI
VTGNRLGTLVQTYVNAINSGTVPCLENAVTTLAQRENSIAVQKAADHYSEQMAQRMRLPTDTLQELLTVH
AACEKEAIAVFMEHSFKDDEQEFQKKLVVTIEERKEEFIRQNEAASIRHCQAELERLSESLRKSISCGAF
SVPGGHSLYLEARKKIELGYQQVLRKGVKAKEVLKSFLQSQAIMEDSILQSDKALTDGERAIAAERTKKE
VAEKELELLRQRQKEQEQVMEAQERSFRENIAKLQEKMESEKEMLLREQEKMLEHKLKVQEELLIEGFRE
KSDMLKNEISHLREEMERTRRKPSLFGQILDTIGNAFIMILPGAGKLFGVGLKFLGSLSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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