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Report for CCDS16779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16779.1 Public Mus musculus 2 Crls1 23 108 98 CCDS HistoryNCBI Gene:66586Re-query CCDS DB by CCDS ID:16779.1Re-query CCDS DB by GeneID:66586See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16779.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028835.12 ENSMUSP00000028835.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028835.12Link to Ensembl Protein Viewer:ENSMUSP00000028835.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028835Re-query CCDS DB by Protein ID:ENSMUSP00000028835
Original member Current member NCBI NM_001024385.1 NP_001019556.1 Accepted alive Link to Nucleotide Sequence:NM_001024385.1Link to Protein Sequence:NP_001019556.1Re-query CCDS DB by Nucleotide ID:NM_001024385Re-query CCDS DB by Protein ID:NP_001019556Link to BLAST:NP_001019556.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019556.1 303 Q80ZM8 303 100% 0 0

Chromosomal Locations for CCDS 16779.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 132846817 132847125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132849866 132850003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132854893 132855022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132861209 132861294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132862335 132862403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132864090 132864181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132865837 132865924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGTTGGCTTGGCGCGTGGCGCGCGGCGCGTGGGGCCCTCTTCGCGTGGCCCTCCGGCCTCCGGGGGCGC
GG
CTCGGCAGGGGCGGCTCCCGCAGGGCCCTGCTGCCGCCCGCGGCCTGCTGCCTCGGCTGCCTGGCTGA
G
CGCTGGCGGCTGCGGCCGGCCGCGTTCGCCTTGCGGCTGCCCGGCGCCGGCCCGCGGACCCACTGCTCG
GGC
GCGGGGAAGGCAGCCCCGGAGCCCGCCGCCGGAGGAGGAGGTGCCGCCGCGCAGGCCCCCAGCGCCC
GA
TGGGTCCCGGCGAGCGCCGCCAGCTCGTATGAAAATCCATGGACAATCCCAAATTTGTTGTCAATGAC
A
AGAATTGGCCTGGCCCCCGTGTTGGGCTACCTGATTCTTGAAGAAGACTTTAATGTTGCACTAGGTGTT
TTT
GCTTTAGCCGGGCTAACGGATTTGTTGGATGGATTTATTGCTCGAAACTGGGCCAACCAAAAATCAG
CT
TTGGGAAGTGCTCTTGATCCACTTGCTGATAAAGTTCTTATCAGCATCTTATATATTAGCTTGACCTA
T
GCAGATCTTATTCCAGTCCCACTCACTTACATGATAATTTCAAGAGATGTAATGTTGATCGCTGCTGTG
TTT
TATGTCAGATACCGAACTCTGCCAACACCGCGAACACTAGCTAAGTACTTCAATCCTTGCTATGCCA
CG
GCTAGGTTAAAACCAACATTCATCAGCAAGGTAAATACAGCAGTCCAGTTAATTTTGGTGGCAGCTTC
T
TTGGCAGCTCCAGTTTTCAATTATGCTGACAGCATTTATCTTCAGATACTATGGTGTTGCACAGCATTC
ACT
ACAGCTGCATCAGCATACAGTTATTATCACTATGGTCGGAAAACTGTTCAGGTGATAAAGGGCAAAT
GA


Translation (303 aa):
MLAWRVARGAWGPLRVALRPPGARLGRGGSRRALLPPAACCLGCLAERWRLRPAAFALRLPGAGPRTHCS
G
AGKAAPEPAAGGGGAAAQAPSARWVPASAASS
YENPWTIPNLLSMTRIGLAPVLGYLILEEDFNVALGV
F
ALAGLTDL
LDGFIARNWANQKSALGSALDPLADKVLISILYISLTYADLIPVPLTYMIISRDVMLIAAV
F
YVRYRTLPTP
RTLAKYFNPCYATARLKPTFISKVNTAVQLILVAASLAAPVFNYADSIYLQILWCCTAF
T
TAASAYSYYHYGRKTVQVIKGK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser