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Report for CCDS16063.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16063.1 Public Mus musculus 2 Tbr1 23 108 98 CCDS HistoryNCBI Gene:21375Re-query CCDS DB by CCDS ID:16063.1Re-query CCDS DB by GeneID:21375See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16063.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048934.14 ENSMUSP00000046787.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048934.14Link to Ensembl Protein Viewer:ENSMUSP00000046787.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000048934Re-query CCDS DB by Protein ID:ENSMUSP00000046787
Original member NCBI NM_009322.3 NP_033348.2 Updated not alive Link to Nucleotide Sequence:NM_009322.3Link to Protein Sequence:NP_033348.2Re-query CCDS DB by Nucleotide ID:NM_009322Re-query CCDS DB by Protein ID:NP_033348
Current member NCBI NM_009322.4 NP_033348.2 Accepted alive Link to Nucleotide Sequence:NM_009322.4Link to Protein Sequence:NP_033348.2Re-query CCDS DB by Nucleotide ID:NM_009322Re-query CCDS DB by Protein ID:NP_033348Link to BLAST:NP_033348.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033348.2 681 Q64336 681 100% 0 0

Chromosomal Locations for CCDS 16063.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 61804708 61805399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61805974 61806128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61806632 61806753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61807279 61807437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61808499 61808560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61811583 61812438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2046 nt):
ATGCAGCTGGAGCATTGCCTCTCTCCTTCTATCATGCTCTCCAAGAAATTTCTCAATGTGAGCAGCAGCT
ACCCACATTCGGGCGGATCTGAGCTTGTCTTGCATGATCATCCCATTATCTCGACCACTGACAACCTGGA
GAGAAGTTCACCTTTGAAAAAAATTACCAGGGGGATGACGAATCAGTCAGATACAGACAATTTTCCTGAC
TCCAAGGACTCACCAGGGGACGTCCAGAGAAGTAAACTCTCTCCTGTCTTGGACGGGGTCTCTGAGCTTC
GTCACAGTTTCGATGGCTCTGCTGCAGATCGTTACCTACTCTCTCAGTCCAGCCAGCCACAGTCTGCGGC
CACCGCTCCCAGTGCCATGTTCCCGTACCCCAGCCAGCACGGACCGGCGCATCCCGCCTTCTCCATCGGC
AGCCCCAGTCGCTACATGGCCCACCACCCGGTCATTACCAACGGAGCTTACAACAGCCTGCTGTCCAACT
CTTCGCCGCAGGGCTACCCCACGGCCGGCTACCCCTACCCACAGCAGTACGGCCACTCCTACCAAGGAGC
CCCTTTCTACCAGTTCTCCTCCACCCAGCCCGGGTTGGTGCCCGGCAAGGCGCAAGTATACCTGTGCAAC
AGGCCACTTTGGCTGAAATTTCATCGGCATCAAACGGAGATGATCATCACTAAACAGGGAAGGCGCATGT
TTCCCTTTTTGAGTTTTAACATTTCTGGTCTCGATCCCACCGCTCATTACAATATTTTTGTGGATGTGAT
TTTGGCGGATCCCAATCACTGGAGGTTTCAAGGAGGCAAATGGGTTCCTTGTGGCAAAGCGGACACCAAT
GTGCAAGGAAACCGGGTCTATATGCATCCGGATTCCCCCAACACTGGGGCTCACTGGATGCGGCAAGAAA
TCTCTTTTGGAAAATTAAAACTTACCAACAACAAGGGAGCATCAAACAACAATGGGCAGATGGTGGTTTT
ACAGTCCCTGCACAAGTACCAGCCCCGTCTGCACGTGGTGGAAGTGAATGAGGATGGCACAGAGGACACC
AGCCAGCCAGGCCGAGTCCAGACGTTCACTTTTCCGGAGACTCAGTTCATCGCTGTCACCGCCTACCAGA
ACACGGATATTACACAACTAAAAATAGATCATAACCCCTTTGCAAAAGGATTTCGAGATAACTATGACAC
GATCTACACGGGCTGCGACATGGACCGCTTGACCCCGTCGCCCAACGACTCTCCGCGCTCGCAGATCGTG
CCCGGCGCCCGCTACGCCATGGCCGGCTCTTTCCTGCAAGACCAGTTCGTGAGCAACTACGCCAAGGCCC
GCTTCCACCCGGGCGCCGGCGCGGGTCCCGGGCCGGGCACGGACCGCAGCGTGCCGCACACCAACGGGCT
GCTGTCCCCGCAGCAGGCCGAGGACCCGGGCGCGCCGTCGCCGCAGCGCTGGTTCGTCACGCCGGCCAAC
AACCGGCTGGACTTCGCGGCCTCGGCCTACGACACGGCCACGGACTTCGCCGGCAACGCGGCCACGCTGC
TGTCGTATGCGGCCGCGGGCGTGAAGGCGCTGCCCTTGCAGGCCGCGGGCTGCACGGGCCGCCCGCTCGG
CTACTACGCCGACCCTTCGGGCTGGGGCGCGCGCAGCCCCCCGCAGTACTGCGGCGCCAAGTCGGGCTCC
GTGCTCCCCTGCTGGCCCAACAGCGCCGCGGCCGCCGCGCGCATGGCCGGCGCCAACCCCTATCTGGGCG
AGGAGGCCGAGGGCCTGGCGGCCGAGCGCTCGCCGCTGGCGCCCGCCGCCGAGGACGCCAAGCCCAAGGA
CCTGTCCGACTCCAGCTGGATCGAGACGCCCTCCTCCATCAAATCCATCGACTCCAGCGACTCGGGGATT
TACGAGCAGGCCAAGCGGAGGCGGATCTCGCCGGCTGACACGCCGGTGTCTGAGAGCTCGTCCCCGCTCA
AGAGCGAGGTGCTGGCCCAGCGGGACTGCGAGAAGAACTGCGCCAAGGACATAGGCGGCTACTATGGCTT
CTACTCGCACAGCTAG

Translation (681 aa):
MQLEHCLSPSIMLSKKFLNVSSSYPHSGGSELVLHDHPIISTTDNLERSSPLKKITRGMTNQSDTDNFPD
SKDSPGDVQRSKLSPVLDGVSELRHSFDGSAADRYLLSQSSQPQSAATAPSAMFPYPSQHGPAHPAFSIG
SPSRYMAHHPVITNGAYNSLLSNSSPQGYPTAGYPYPQQYGHSYQGAPFYQFSSTQPGLVPGKAQVYLCN
RPLWLKFHRHQTEMIITKQGRRMFPFLSFNISGLDPTAHYNIFVDVILADPNHWRFQGGKWVPCGKADTN
VQGNRVYMHPDSPNTGAHWMRQEISFGKLKLTNNKGASNNNGQMVVLQSLHKYQPRLHVVEVNEDGTEDT
SQPGRVQTFTFPETQFIAVTAYQNTDITQLKIDHNPFAKGFRDNYDTIYTGCDMDRLTPSPNDSPRSQIV
PGARYAMAGSFLQDQFVSNYAKARFHPGAGAGPGPGTDRSVPHTNGLLSPQQAEDPGAPSPQRWFVTPAN
NRLDFAASAYDTATDFAGNAATLLSYAAAGVKALPLQAAGCTGRPLGYYADPSGWGARSPPQYCGAKSGS
VLPCWPNSAAAAARMAGANPYLGEEAEGLAAERSPLAPAAEDAKPKDLSDSSWIETPSSIKSIDSSDSGI
YEQAKRRRISPADTPVSESSSPLKSEVLAQRDCEKNCAKDIGGYYGFYSHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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